Sequence 1: | NP_001262916.1 | Gene: | nAChRalpha1 / 42918 | FlyBaseID: | FBgn0000036 | Length: | 597 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_006529141.1 | Gene: | Chrng / 11449 | MGIID: | 87895 | Length: | 541 | Species: | Mus musculus |
Alignment Length: | 545 | Identity: | 181/545 - (33%) |
---|---|---|---|
Similarity: | 275/545 - (50%) | Gaps: | 84/545 - (15%) |
- Green bases have known domain annotations that are detailed below.
Fly 18 GGLANPDAKRLYDDLLSNYNRLIRPVGNNSDRLTVKMGLRLSQLIDVNLKNQIMTTNVWVEQEWN 82
Fly 83 DYKLKWNPDDYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVTIMTKAILHHTGKVVWKPPAIYKS 147
Fly 148 FCEIDVEYFPFDEQTCFMKFGSWTYDGYMVDLRHLKQTADSDNIE-VGIDLQDYYISVEWDIMRV 211
Fly 212 PAVRNEKFYSCCEEP-YLDIVFNLTLRRKTLFYTVNLIIPCVGISFLSVLVFYLPSDS-GEKISL 274
Fly 275 CISILLSLTVFFLLLAEIIPPTSLTVPLLGKYLLFTMMLVTLSVVVTIAVLNVNFRSPVTHRMAP 339
Fly 340 WVQRLFIQILPKLLCIERPKKEEPEEDQPPEVLTDVYHLPPDVDKFVNYDSKRFSGDYGIPALPA 404
Fly 405 SHRFDL--AAAGG--ISAHCFAEPPLPSSLPLPGADDDLFSPSGLNGDI---------------S 450
Fly 451 PGCCPAAAAAAAADLSPTFEKPYAREMEKTIEGSRFIAQHVKNKDKFESVEEDWKYVAMVLDRMF 515
Fly 516 LWIFAIACVVGTALIILQAPSLYDQ 540 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
nAChRalpha1 | NP_001262916.1 | Neur_chan_LBD | 25..240 | CDD:280998 | 87/216 (40%) |
LIC | 27..530 | CDD:273305 | 175/524 (33%) | ||
Neur_chan_memb | 247..530 | CDD:280999 | 83/302 (27%) | ||
Chrng | XP_006529141.1 | LGIC_ECD_nAChR_G | 71..263 | CDD:349830 | 78/193 (40%) |
Neur_chan_memb | 270..515 | CDD:367256 | 83/302 (27%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG3645 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
2 | 1.810 |