Sequence 1: | NP_001262916.1 | Gene: | nAChRalpha1 / 42918 | FlyBaseID: | FBgn0000036 | Length: | 597 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_006532069.1 | Gene: | Chrne / 11448 | MGIID: | 87894 | Length: | 494 | Species: | Mus musculus |
Alignment Length: | 555 | Identity: | 177/555 - (31%) |
---|---|---|---|
Similarity: | 270/555 - (48%) | Gaps: | 87/555 - (15%) |
- Green bases have known domain annotations that are detailed below.
Fly 1 MGSVLFAAVFIALHFATGGLANPDAKRLYDDLLSNYNRLIRPVGNNSDRLTVKMGLRLSQLIDVN 65
Fly 66 LKNQIMTTNVWVEQEWNDYKLKWNPDDYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVTIMTKAI 130
Fly 131 LHHTGKVVWKPPAIYKSFCEIDVEYFPFDEQTCFMKFGSWTYDGYMVDLRHLKQTADSDNI--EV 193
Fly 194 GIDLQDYYISVEWDIMRVPAVRNEKFYSCCEEP-YLDIVFNLTLRRKTLFYTVNLIIPCVGISFL 257
Fly 258 SVLVFYLPSDS-GEKISLCISILLSLTVFFLLLAEIIPPTSLTVPLLGKYLLFTMMLVTLSVVVT 321
Fly 322 IAVLNVNFRSPVTHRMAPWVQRLFIQILPKLLCIERPKKEEPEEDQPPEVLTDVYHLPPDVDKFV 386
Fly 387 NYDSKRFSGDYGIPALPASH------RFDLAAAGGISAHCFAEPPLPSSLPLPGADDDLFSPSGL 445
Fly 446 NGDISPGCCPAAAAA---AAADLSPTFEKPYAREMEKTIEGSRFIAQHVKNKDKFESVEEDWKYV 507
Fly 508 AMVLDRMFLWIFAIACVVGTALIIL-----QAPSL 537 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
nAChRalpha1 | NP_001262916.1 | Neur_chan_LBD | 25..240 | CDD:280998 | 81/217 (37%) |
LIC | 27..530 | CDD:273305 | 166/515 (32%) | ||
Neur_chan_memb | 247..530 | CDD:280999 | 80/292 (27%) | ||
Chrne | XP_006532069.1 | LGIC_ECD_nAChR_E | 49..239 | CDD:349831 | 71/191 (37%) |
Neur_chan_memb | 247..474 | CDD:367256 | 80/292 (27%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG3645 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
2 | 1.810 |