Sequence 1: | NP_001262916.1 | Gene: | nAChRalpha1 / 42918 | FlyBaseID: | FBgn0000036 | Length: | 597 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_660111.3 | Gene: | Chrna3 / 110834 | MGIID: | 87887 | Length: | 499 | Species: | Mus musculus |
Alignment Length: | 540 | Identity: | 239/540 - (44%) |
---|---|---|---|
Similarity: | 340/540 - (62%) | Gaps: | 56/540 - (10%) |
- Green bases have known domain annotations that are detailed below.
Fly 1 MGSVL----FAAVFIALHFATGGLANPDAKRLYDDLLSNYNRLIRPVGNNSDRLTVKMGLRLSQL 61
Fly 62 IDVNLKNQIMTTNVWVEQEWNDYKLKWNPDDYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVTIM 126
Fly 127 TKAILHHTGKVVWKPPAIYKSFCEIDVEYFPFDEQTCFMKFGSWTYDGYMVDLRHLKQTADSDNI 191
Fly 192 EVG--IDLQDYYISVEWDIMRVPAVRNEKFYSCCEEPYLDIVFNLTLRRKTLFYTVNLIIPCVGI 254
Fly 255 SFLSVLVFYLPSDSGEKISLCISILLSLTVFFLLLAEIIPPTSLTVPLLGKYLLFTMMLVTLSVV 319
Fly 320 VTIAVLNVNFRSPVTHRMAPWVQRLFIQILPKLLCIERPKKEEPEEDQPPEVLTDVYHLP-PDVD 383
Fly 384 KFVNYDSKRFSGDYGIPALPASHRFDLAAAGGISAHCFAEPPLPSSLPLPGADDDLFSPSGLNGD 448
Fly 449 ISPGCCPAAAAAAAADLSPTFEKPYAREMEKTIEGSRFIAQHVKNKDKFESVEEDWKYVAMVLDR 513
Fly 514 MFLWIFAIACVVGTALIILQ 533 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
nAChRalpha1 | NP_001262916.1 | Neur_chan_LBD | 25..240 | CDD:280998 | 109/216 (50%) |
LIC | 27..530 | CDD:273305 | 231/505 (46%) | ||
Neur_chan_memb | 247..530 | CDD:280999 | 117/283 (41%) | ||
Chrna3 | NP_660111.3 | LIC | 24..490 | CDD:273305 | 232/514 (45%) |
LGIC_ECD_nAChR_A3 | 29..235 | CDD:349817 | 109/216 (50%) | ||
Cys-loop | 153..167 | CDD:349817 | 10/13 (77%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 1 | 1.000 | 253 | 1.000 | Domainoid score | I2060 |
eggNOG | 1 | 0.900 | - | - | E1_KOG3645 | |
Hieranoid | 1 | 1.000 | - | - | ||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 1 | 1.050 | 476 | 1.000 | Inparanoid score | I1470 |
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 1 | 1.010 | - | - | QHG45250 | |
OrthoDB | 1 | 1.010 | - | - | D188416at33208 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0000583 | |
OrthoInspector | 1 | 1.000 | - | - | mtm8871 | |
orthoMCL | 1 | 0.900 | - | - | OOG6_101158 | |
Panther | 1 | 1.100 | - | - | O | PTHR18945 |
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 1 | 1.030 | - | avgDist | Average_Evolutionary_Distance | R2381 |
SonicParanoid | 1 | 1.000 | - | - | X294 | |
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
14 | 13.910 |