Protein Alignment nAChRalpha1 and LOC100537401

DIOPT Version :9

• Sequence 1: NP_001262916.1
• Gene: nAChRalpha1 / 42918
• FlyBaseID: FBgn0000036
• Length: 597
• Species: Drosophila melanogaster
• Sequence 2: XP_021333008.1
• Gene: LOC100537401 / 100537401
• -ID: -
• Length: 416
• Species: Danio rerio
• Alignment Length: 261
• Identity: 142/261 - (54%)
• Similarity: 187/261 - (71%)
• Gaps: 9/261 - (3%)

  Fly    99 LHVPSEHIWLPDIVLYNNADGNYEVTIMTKAILHHTGKVVWKPPAIYKSFCEIDVEYFPFDEQTC 163
            :.:|::.||.|||||||||||::.||.:|||.|.|.|:|.|.|||||||.|.|||.:.|||:|.|
Zfish     1 MRIPAQFIWKPDIVLYNNADGDFTVTHLTKAHLLHDGRVTWIPPAIYKSSCSIDVTFLPFDQQNC 65

  Fly   164 FMKFGSWTYDGYMVDLRHLKQTADSDNIEVGIDLQDYYISVEWDIMRVPAVRNEKFYSCCEEPYL 228
            .:||||||||...:||..:   |||      :|..||:.|.||.|....|..|.|.|.||.|.|.
Zfish    66 TIKFGSWTYDRSKIDLIRI---ADS------VDQLDYWESGEWLITSAVATYNVKKYECCSEEYA 121

  Fly   229 DIVFNLTLRRKTLFYTVNLIIPCVGISFLSVLVFYLPSDSGEKISLCISILLSLTVFFLLLAEII 293
            ||.::..:||..||||:||||||:.|..|:|||||||||.||::::|||:|||||||.||:.|||
Zfish   122 DITYSFIIRRLPLFYTINLIIPCLLILCLTVLVFYLPSDCGEEVTMCISVLLSLTVFLLLITEII 186

  Fly   294 PPTSLTVPLLGKYLLFTMMLVTLSVVVTIAVLNVNFRSPVTHRMAPWVQRLFIQILPKLLCIERP 358
            |||||.:||:.:||||.|:.:.|.:::|:.||||:.|||.||.|..||:|.|:.::|:.:.|:||
Zfish   187 PPTSLVIPLIAEYLLFIMIFIILFIIITVFVLNVHHRSPDTHSMPQWVRRFFLDVMPRFIFIQRP 251

  Fly   359 K 359
            :
Zfish   252 Q 252

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
nAChRalpha1	NP_001262916.1	Neur_chan_LBD	25..240	CDD:280998	72/140 (51%)
		LIC	27..530	CDD:273305	142/261 (54%)
		Neur_chan_memb	247..530	CDD:280999	65/113 (58%)
LOC100537401	XP_021333008.1	Neur_chan_LBD	<2..>252	CDD:332142	141/258 (55%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D188416at33208
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
ZFIN	0	0.000	Not matched by this tool.
	1	1.010