Sequence 1: | NP_001262916.1 | Gene: | nAChRalpha1 / 42918 | FlyBaseID: | FBgn0000036 | Length: | 597 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_002941867.4 | Gene: | chrne / 100497712 | XenbaseID: | XB-GENE-979686 | Length: | 505 | Species: | Xenopus tropicalis |
Alignment Length: | 550 | Identity: | 190/550 - (34%) |
---|---|---|---|
Similarity: | 286/550 - (52%) | Gaps: | 83/550 - (15%) |
- Green bases have known domain annotations that are detailed below.
Fly 4 VLFAAVFIALHFATGGLAN-PDAKRLYDDLLSNYNRLIRPVGNNSDRLTVKMGLRLSQLIDVNLK 67
Fly 68 NQIMTTNVWVEQEWNDYKLKWNPDDYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVTIMTKAILH 132
Fly 133 HTGKVVWKPPAIYKSFCEIDVEYFPFDEQTCFMKFGSWTYDGYMVDLRHLKQTADSDN----IEV 193
Fly 194 GIDLQDYYISVEWDIMRVPA--VRNEKFYSCCEEPYLDIVFNLTLRRKTLFYTVNLIIPCVGISF 256
Fly 257 LSVLVFYLPSDS-GEKISLCISILLSLTVFFLLLAEIIPPTSLTVPLLGKYLLFTMMLVTLSVVV 320
Fly 321 TIAVLNVNFRSPVTHRMAPWVQRLFIQILPKLLCIERPKKEEPEEDQPPE---------VLTDVY 376
Fly 377 HL-PPDVDKFVNYDSKRFSGDYGIPALPASHR---FDLAAAGGISAHCFAEPPLPSSLPLPGADD 437
Fly 438 DLFSPSGLNGDISPGCCPAAAAAAAADLSPTFEKPYAREMEKTIEGSRFIAQHVKNKDKFESVEE 502
Fly 503 DWKYVAMVLDRMFLWIFAIACVVGTALIIL 532 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
nAChRalpha1 | NP_001262916.1 | Neur_chan_LBD | 25..240 | CDD:280998 | 92/220 (42%) |
LIC | 27..530 | CDD:273305 | 180/522 (34%) | ||
Neur_chan_memb | 247..530 | CDD:280999 | 83/296 (28%) | ||
chrne | XP_002941867.4 | LGIC_ECD_nAChR_G | 47..241 | CDD:349830 | 85/197 (43%) |
Neur_chan_memb | 248..491 | CDD:397193 | 83/297 (28%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
2 | 1.910 |