Sequence 1: | NP_001262916.1 | Gene: | nAChRalpha1 / 42918 | FlyBaseID: | FBgn0000036 | Length: | 597 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_002942943.1 | Gene: | chrnb3 / 100379831 | XenbaseID: | XB-GENE-5793509 | Length: | 460 | Species: | Xenopus tropicalis |
Alignment Length: | 545 | Identity: | 226/545 - (41%) |
---|---|---|---|
Similarity: | 313/545 - (57%) | Gaps: | 102/545 - (18%) |
- Green bases have known domain annotations that are detailed below.
Fly 3 SVLFAAVFIALHFATGGLA--NPDAK---RLYDDLLSNYNRLIRPVGNNSDRLTVKMGLRLSQLI 62
Fly 63 DVNLKNQIMTTNVWVEQEWNDYKLKWNPDDYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVTIMT 127
Fly 128 KAILHHTGKVVWKPPAIYKSFCEIDVEYFPFDEQTCFMKFGSWTYDGYMVDLRHLKQTADSDNIE 192
Fly 193 VGIDLQDYYISVEWDIMR---VPAVRNEKFYSCCEEPYLDIVFNLTLRRKTLFYTVNLIIPCVGI 254
Fly 255 SFLSVLVFYLPSDSGEKISLCISILLSLTVFFLLLAEIIPPTSLTVPLLGKYLLFTMMLVTLSVV 319
Fly 320 VTIAVLNVNFRSPVT-HRMAPWVQRLFIQILPKLLCIERPKKEEPEEDQPPEVLTDVYHLPPDVD 383
Fly 384 KFVNYDSKRFSGDYGIPALPASHRFDLAAAGGISAHCFAEPPLPSSLPLPGADDDLFSPSGLNGD 448
Fly 449 ISPGCCPAAAAAAAADLSPTFEKPYAREMEKTIEGSRFIAQHVKNKDKFESVEEDWKYVAMVLDR 513
Fly 514 MFLWIFAIACVVGTALIILQAPSLY 538 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
nAChRalpha1 | NP_001262916.1 | Neur_chan_LBD | 25..240 | CDD:280998 | 105/220 (48%) |
LIC | 27..530 | CDD:273305 | 215/506 (42%) | ||
Neur_chan_memb | 247..530 | CDD:280999 | 107/283 (38%) | ||
chrnb3 | XP_002942943.1 | LIC | 2..451 | CDD:273305 | 225/539 (42%) |
LGIC_ECD_nAChR_B3 | 56..234 | CDD:349827 | 96/191 (50%) | ||
Cys-loop | 155..169 | CDD:349827 | 8/13 (62%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 1 | 1.000 | 252 | 1.000 | Domainoid score | I2037 |
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D188416at33208 | |
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 1 | 1.000 | - | - | mtm9533 | |
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 0 | 0.000 | Not matched by this tool. | |||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
3 | 3.010 |