Sequence 1: | NP_001262916.1 | Gene: | nAChRalpha1 / 42918 | FlyBaseID: | FBgn0000036 | Length: | 597 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_002937929.1 | Gene: | chrna5 / 100379824 | XenbaseID: | XB-GENE-5755296 | Length: | 476 | Species: | Xenopus tropicalis |
Alignment Length: | 544 | Identity: | 206/544 - (37%) |
---|---|---|---|
Similarity: | 301/544 - (55%) | Gaps: | 137/544 - (25%) |
- Green bases have known domain annotations that are detailed below.
Fly 9 VFIALHFATG--GLANPD--AK---RLYDDLL--SNYNRLIRPVGNNSDRLTVKMGLRLSQLIDV 64
Fly 65 NLKNQIMTTNVWVEQEWNDYKLKWNPDDYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVTIMTKA 129
Fly 130 ILHHTGKVVWKPPAIYKSFCEIDVEYFPFDEQTCFMKFGSWTYDGYMVDL----RHLKQTADSDN 190
Fly 191 IEVGIDLQDYYISVEWDIMRVPAVRNEKFYSCCEEPYLDIVFNLTLRRKTLFYTVNLIIPCVGIS 255
Fly 256 FLSVLVFYLPSDSGEKISLCISILLSLTVFFLLLAEIIPPTSLTVPLLGKYLLFTMMLVTLSVVV 320
Fly 321 TIAVLNVNFRSPVTHR-MAPWVQRLFIQILPKLLC----IER--PKKEEPEEDQPPEVLTDVYHL 378
Fly 379 PPDVDKFVNYDSKRFSGDYGIPALPASHRFDLAAAGGISAHCFAEPPLPSSLPLPGADDDLFSPS 443
Fly 444 GLNGDISPGCCPAAAAAAAADLSPTFEKPYAREMEKTIEGSRFIAQHVKNKDKFESVEEDWKYVA 508
Fly 509 MVLDRMFLWIFAIACVVGTALIIL 532 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
nAChRalpha1 | NP_001262916.1 | Neur_chan_LBD | 25..240 | CDD:280998 | 98/223 (44%) |
LIC | 27..530 | CDD:273305 | 199/515 (39%) | ||
Neur_chan_memb | 247..530 | CDD:280999 | 99/289 (34%) | ||
chrna5 | XP_002937929.1 | LIC | 19..453 | CDD:273305 | 206/544 (38%) |
LGIC_ECD_nAChR_A5 | 47..255 | CDD:349819 | 97/223 (43%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 1 | 1.000 | 252 | 1.000 | Domainoid score | I2037 |
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D188416at33208 | |
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 0 | 0.000 | Not matched by this tool. | |||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
2 | 2.010 |