Sequence 1: | NP_001262916.1 | Gene: | nAChRalpha1 / 42918 | FlyBaseID: | FBgn0000036 | Length: | 597 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001093684.1 | Gene: | chrnb2 / 100101688 | XenbaseID: | XB-GENE-854457 | Length: | 499 | Species: | Xenopus tropicalis |
Alignment Length: | 545 | Identity: | 231/545 - (42%) |
---|---|---|---|
Similarity: | 327/545 - (60%) | Gaps: | 89/545 - (16%) |
- Green bases have known domain annotations that are detailed below.
Fly 5 LFAAVFIALHFATGGLANPDAKRLYDDLL--SNYNRLIRPVGNNSDRLTVKMGLRLSQLIDVNLK 67
Fly 68 NQIMTTNVWVEQEWNDYKLKWNPDDYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVTIMTKAILH 132
Fly 133 HTGKVVWKPPAIYKSFCEIDVEYFPFDEQTCFMKFGSWTYDGYMVDLRHLKQTADSDNIEVGIDL 197
Fly 198 QDYYISVEWDIMRVPAVRNEKFYSCCEEPYLDIVFNLTLRRKTLFYTVNLIIPCVGISFLSVLVF 262
Fly 263 YLPSDSGEKISLCISILLSLTVFFLLLAEIIPPTSLTVPLLGKYLLFTMMLVTLSVVVTIAVLNV 327
Fly 328 NFRSPVTHRMAPWVQRLFIQILPKLLCIERPKK-------EEPEEDQPPEVLTDVYHLPPDVDKF 385
Fly 386 VNYDSKRFSGDYGIPALPASHRFDLAAAGGISAHCFAEPPLPSSLPLPGAD-DDLFSPSGLN--- 446
Fly 447 ---GDISPGCCPAAAAAAAADLSPTFEKPYAREMEKTIEGSRFIAQHVKNKDKFESVEEDWKYVA 508
Fly 509 MVLDRMFLWIFAIACVVGTALIILQ 533 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
nAChRalpha1 | NP_001262916.1 | Neur_chan_LBD | 25..240 | CDD:280998 | 102/216 (47%) |
LIC | 27..530 | CDD:273305 | 223/518 (43%) | ||
Neur_chan_memb | 247..530 | CDD:280999 | 115/296 (39%) | ||
chrnb2 | NP_001093684.1 | LIC | 29..479 | CDD:273305 | 223/522 (43%) |
LGIC_ECD_nAChR_B2 | 31..234 | CDD:349826 | 102/214 (48%) | ||
Cys-loop | 155..169 | CDD:349826 | 8/13 (62%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 1 | 1.000 | 227 | 1.000 | Domainoid score | I2451 |
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 1 | 1.000 | - | - | H595 | |
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D188416at33208 | |
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 1 | 1.000 | - | - | mtm14085 | |
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 0 | 0.000 | Not matched by this tool. | |||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
4 | 4.010 |