DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG18528 and GTPBP3

DIOPT Version :9

Sequence 1:NP_651251.3 Gene:CG18528 / 42906 FlyBaseID:FBgn0039189 Length:493 Species:Drosophila melanogaster
Sequence 2:NP_598399.2 Gene:GTPBP3 / 84705 HGNCID:14880 Length:524 Species:Homo sapiens


Alignment Length:505 Identity:220/505 - (43%)
Similarity:306/505 - (60%) Gaps:44/505 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 SGCTIYSLSSGHVKCGVSVIRVSGPQTKKALRAIVANKEYEPKARQAYLKSFYHPASKEMIDRGL 85
            ||.||::||||..:||::|||.|||.:..|||.:.|.::. |.||.|.|:....|.|.|.:||.|
Human    32 SGATIFALSSGQGRCGIAVIRTSGPASGHALRILTAPRDL-PLARHASLRLLSDPRSGEPLDRAL 95

  Fly    86 LLWFPGPASFTGEDSCEFQVHGSLAVIAAMLDALGKVDGLRPAEPGEFTKRAFFGGKLDLTEVEG 150
            :||||||.||||||..||.|||..||::.:|.|||.|.||||||.||||:|||..|||:||||||
Human    96 VLWFPGPQSFTGEDCVEFHVHGGPAVVSGVLQALGSVPGLRPAEAGEFTRRAFANGKLNLTEVEG 160

  Fly   151 LADLIHAETEAQRKQALLQSTGALARLYDNWRRRLIRCAAHLEAYIDFAEEEQIEGGIILQLGK- 214
            |||||||||||||:|||.|..|.|..|...|...|.:..||:||||||.|::.:|.|::.|.|. 
Human   161 LADLIHAETEAQRRQALRQLDGELGHLCRGWAETLTKALAHVEAYIDFGEDDNLEEGVLEQGGST 225

  Fly   215 -------------------------------ELKAVKREIREHLSDQRQGELLRDGVRTVIIGAP 248
                                           |::|::..:..||.|.|:|:.||.||..|:.|.|
Human   226 WWWGRKTPHISPQRLPSLSLSACLLSPTADIEVRALQVALGAHLRDARRGQRLRSGVHVVVTGPP 290

  Fly   249 NVGKSSLLNLLCQRSVSIVTDQAGTTRDIIETMHNFGGYPVVFSDTAGLRRYTTDSIEQEGMQRA 313
            |.|||||:|||.::.||||:.:.|||||::||..:..|:||:.|||||||. ....:||||::||
Human   291 NAGKSSLVNLLSRKPVSIVSPEPGTTRDVLETPVDLAGFPVLLSDTAGLRE-GVGPVEQEGVRRA 354

  Fly   314 KNCLVQSDLILLLAEAKNIAQLTHDDAVAPFVDSYLGELDIPLDMCSGKRLQLVANKTDTLTDEE 378
            :..|.|:||||.:.:|.::|..:..:.:|..|.|...:  .|.|  |.:||.||.||:|.|:.|.
Human   355 RERLEQADLILAMLDASDLASPSSCNFLATVVASVGAQ--SPSD--SSQRLLLVLNKSDLLSPEG 415

  Fly   379 HQQLDKLSNVLAISCHKPDKMPVFLGSLEKQLQELCGEPRAENPRITNTRYRQQLERCIENIDIF 443
            ......|...|.:||...:.:...|.:|.|:|..:||:|..:.|.:|..|::..|:.|::.:..:
Human   416 PGPGPDLPPHLLLSCLTGEGLDGLLEALRKELAAVCGDPSTDPPLLTRARHQHHLQGCLDALGHY 480

  Fly   444 LRDYRPDVYPDMAIAASKLRNSVRCIERITGHISCEDILDVVFKDFCIGK 493
            .:.      .|:|:||..||.:...:.|:||....|:|||::|:|||:||
Human   481 KQS------KDLALAAEALRVARGHLTRLTGGGGTEEILDIIFQDFCVGK 524

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG18528NP_651251.3 trmE 24..493 CDD:235392 216/500 (43%)
TrmE_N 24..142 CDD:287381 66/117 (56%)
trmE 237..415 CDD:206727 73/177 (41%)
GTPBP3NP_598399.2 trmE 35..524 CDD:235392 216/500 (43%)
TrmE_N 35..152 CDD:287381 66/117 (56%)
trmE 279..448 CDD:206727 72/173 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165157822
Domainoid 1 1.000 254 1.000 Domainoid score I2077
eggNOG 1 0.900 - - E1_COG0486
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H6600
Inparanoid 1 1.050 395 1.000 Inparanoid score I1974
Isobase 1 0.950 - 0 Normalized mean entropy S1676
OMA 1 1.010 - - QHG62483
OrthoDB 1 1.010 - - D280742at33208
OrthoFinder 1 1.000 - - FOG0003953
OrthoInspector 1 1.000 - - oto89676
orthoMCL 1 0.900 - - OOG6_101467
Panther 1 1.100 - - LDO PTHR42714
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R753
SonicParanoid 1 1.000 - - X2256
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
User_Submission 00.000 Not matched by this tool.
1716.750

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