DRSC/TRiP Functional Genomics Resources

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Protein Alignment Golgin84 and golga5

DIOPT Version :9

Sequence 1:NP_651250.2 Gene:Golgin84 / 42905 FlyBaseID:FBgn0039188 Length:516 Species:Drosophila melanogaster
Sequence 2:NP_001016232.1 Gene:golga5 / 548986 XenbaseID:XB-GENE-1014825 Length:722 Species:Xenopus tropicalis


Alignment Length:729 Identity:174/729 - (23%)
Similarity:294/729 - (40%) Gaps:234/729 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 SWITGLADKAENILNKLDQNAATALQ-----------TENATGSADPMRRS-------------- 42
            ||.||||.:||:.||.:||.|||||:           |.:.:|..:..::|              
 Frog     2 SWFTGLAGRAEDFLNLVDQGAATALKNKDGSSLIIDSTTDYSGHFEEEQKSNEKYQSQAKSSFIS 66

  Fly    43 ------------MTSSTQSLSTSLKSTLSPVRRSGANSSS------------------------- 70
                        |.:.|.::.|..||::.....|..|.||                         
 Frog    67 SAAENIKHQKATMLAGTANIKTGTKSSIESSHNSSVNVSSHRSTTQFVRRKKSEPDDEQLFDFLN 131

  Fly    71 ------------SVKSDGGVSVVTKDMRQKMT-TSASFSNSPDI--------------------- 101
                        :.|....:|...|.:.|.:| |..|.:.:.||                     
 Frog   132 SSDKVHSGSQKETRKESVSLSQSAKPVSQSVTMTEDSHNKNEDIGDPLHPELGTTEPVVKAETLP 196

  Fly   102 ---SANSMDT------NELAAFKI----------ALN-----------EITAERDELRLRLEDLN 136
               |:.::.|      :||:..::          :||           |...|.:|.|.|:|..|
 Frog   197 DSGSSTNLSTTADTKSHELSNLRLENQLLRNEVQSLNQEMASLIQRSKETQKELNEARTRMEKWN 261

  Fly   137 NETEKFD-------------------------------------LHQHTQVLEALVKSLSEERDK 164
            .:..|.|                                     |:..|:.||    :|..|:.:
 Frog   262 GDNSKNDRTLRELQAQVDDLSEAMAAKDSQLAVLKVRLQEADQLLNSRTEALE----TLQSEKSR 322

  Fly   165 AVHDYNEAQAANMA----------------------YVHSISELETNLAKLQQE----------- 196
            .:.|.:|..:.:..                      |....:|..|.|:||:.|           
 Frog   323 ILQDQSEGSSLHSQALQTMQERLREAELTLKREQENYKQMQNEFGTRLSKLEVERQNMAEAVVLA 387

  Fly   197 ---YISAAHK---LQMQTKET----EQQRQELQEYRIKAQRALQAKDSLIAELKAKPTEEGADPN 251
               ||....|   ||.|.|.:    :..:||:.:|:.||.|.||:|:.||..||.....||.|.:
 Frog   388 EKKYIEEKRKSEDLQQQAKTSKVGLDSLKQEMADYKQKATRILQSKEKLINSLKEGSGIEGLDSH 452

  Fly   252 LVSKDSETRFLQIEHESLKQELEHANEELQKARLQLDDYVSQ----ERQRQVELSSARQREETLA 312
            ..|        .:|.|.::.|.:...||:||...|:....::    |.|:..|..|||::.:.:.
 Frog   453 SAS--------TMELEEMRHERDMQREEIQKLMGQIQQLKAELQDVESQQVTEAESAREQLQDVH 509

  Fly   313 KELRQAREHSVTSESDQRVLTQELASLRQQLSNQMAAAATRLQEREQQLQQMRQRLSEEA-NTGA 376
            ::|...|......|::.....||...:::.:.........|:::||.::|::|.:|:.:| ::.:
 Frog   510 EQLATQRRAKQELEAELERQKQEFQYMQEDIYKTKNTLQGRIRDREDEIQKLRNQLTNKALSSSS 574

  Fly   377 KSDYETRLKALTQSLVERQSLLERVTSERNALRLQHEKAQTQLQQNMHLVEMESQRGSS-RHTML 440
            :::.|.||..||::|:::|::||.:::|:|:|..|.|:    |:..|..|:..|..||| ..:::
 Frog   575 QTELENRLHQLTETLIQKQTMLENLSTEKNSLVYQLER----LEHQMKNVQGSSINGSSINMSVI 635

  Fly   441 NSTDDVKAQ-FPLLMHPSPFDNRVA---RRFKRALRQADSMGIRVGTFLRRYPMMRVSVIVYVAL 501
            .:.:..:.: .|:|...|  |..||   .|.::|....|...||:|.||||||:.||.:|:|:||
 Frog   636 ENNEGARMRNVPVLFSDS--DANVAGMYGRVRKAATSIDQFSIRLGIFLRRYPIARVFIIIYMAL 698

  Fly   502 LHLWVMFVLLSTTP 515
            ||||||.|||:.||
 Frog   699 LHLWVMIVLLTYTP 712

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Golgin84NP_651250.2 Golgin_A5 13..505 CDD:255554 158/707 (22%)
golga5NP_001016232.1 Smc <224..558 CDD:224117 72/345 (21%)
Golgin_A5 412..716 CDD:370692 99/315 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 149 1.000 Domainoid score I4401
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 162 1.000 Inparanoid score I4117
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1325011at2759
OrthoFinder 1 1.000 - - FOG0005421
OrthoInspector 1 1.000 - - oto104641
Panther 1 1.100 - - LDO PTHR13815
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X5783
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
77.160

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