DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Golgin84 and Golga5

DIOPT Version :9

Sequence 1:NP_651250.2 Gene:Golgin84 / 42905 FlyBaseID:FBgn0039188 Length:516 Species:Drosophila melanogaster
Sequence 2:NP_001028237.2 Gene:Golga5 / 299258 RGDID:1308163 Length:729 Species:Rattus norvegicus


Alignment Length:735 Identity:188/735 - (25%)
Similarity:302/735 - (41%) Gaps:239/735 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 SWITGLADKAENILNKLDQNAATALQTENA------------------------TG--------S 35
            ||...||.:||::||::||.|||||:.|:.                        ||        :
  Rat     2 SWFADLAGRAEDLLNRVDQGAATALRKESTSNTFYSKNTDYPELHQQNTDSTYHTGQKANYISSA 66

  Fly    36 ADPMRR---------------SMTSSTQSLSTSLKSTLSP----VRRSGA-----------NSSS 70
            ||.:|.               |.|....|..|...|...|    |||..:           |||.
  Rat    67 ADNIRHQKATIIAGTANVKVGSRTGGDASHPTEHASVPRPSSHFVRRKKSEPDDELLFDFLNSSQ 131

  Fly    71 -------SVKSDGG------------VSVVTKDMRQ-KMTTSASFSNSPDIS------------- 102
                   .:|.:.|            ||.||..:.. |.|...|.|.||::|             
  Rat   132 KEPTGRVEIKKEKGKAPVLPSSQSSAVSSVTTSVTTIKATEENSGSQSPEVSSSDSMPEGHKKST 196

  Fly   103 -------ANSMD----------TNELAAFKI----------ALN-----------EITAERDELR 129
                   |.|::          ::||:..::          :||           |...|.::.|
  Rat   197 EESTVSNATSVEHSSAPSDGSMSHELSNLRLENQLLRNEVQSLNQEMASLLQRSKETQEELNKAR 261

  Fly   130 LRLEDLNNETEKFD------------------------------LHQHTQVL----EALVKSLSE 160
            :|:|..|.:..|.|                              |.:..|||    ||| ::|..
  Rat   262 VRVEKWNVDNSKSDRITRELRAQVDDLTEAVAAKDSQLAVLKVRLQEADQVLSSRTEAL-EALQS 325

  Fly   161 ERDKAVHDYNEAQA-ANMA---------------------YVHSISELETNLAKLQ------QEY 197
            |:.:.:.|:||..: .|.|                     |....||..|.|.|::      .|.
  Rat   326 EKSRIMQDHNEGSSLQNQALQTLQERLHEADATLKREQESYKQMQSEFATRLNKMEVERQNLAEA 390

  Fly   198 ISAAHK-----------LQMQTK----ETEQQRQELQEYRIKAQRALQAKDSLIAELKAKPTEEG 247
            ::.|.:           ||.|.|    ..|..:|||.:|:.||.|.||:|:.||..||...:.||
  Rat   391 VTLAERKYSEERKKVDDLQQQVKLHRSSLESAKQELVDYKQKATRILQSKEKLINSLKEGSSFEG 455

  Fly   248 ADPNLVSKDSETRFLQIEHESLKQELEHANEELQKARLQLDDYVSQ----ERQRQVELSSARQRE 308
            .|.:..|        .:|.|.|:.|.|...||:||...|:....|:    |.|:..|..|||::.
  Rat   456 LDSSTAS--------SMELEELRHERELQKEEIQKLMGQIHQLRSELQDMEAQQVSEAESAREQL 512

  Fly   309 ETLAKELRQAREHSVTSESDQRVLTQELASLRQQLSNQMAAAATRLQEREQQLQQMRQRLSEEA- 372
            :.|..::.:.|......|::...:.||...:.:.|........:|:::||:::|::|.:|:.:. 
  Rat   513 QDLQDQIAKQRASKQELETELDRMKQEFHYVEEDLHRTKNTLQSRIKDREEEIQKLRNQLTNKTL 577

  Fly   373 NTGAKSDYETRLKALTQSLVERQSLLERVTSERNALRLQHEKAQTQLQQNMHLVEMESQRGSSRH 437
            :..::|:.|:||..||::|:::|:|||.:::|:|:|..|.|:    |:|.:|........|||.:
  Rat   578 SNSSQSELESRLHQLTETLIQKQTLLESLSTEKNSLVFQLER----LEQQLHSAATGPSSGSSIN 638

  Fly   438 TMLNSTDDVKA----QFPLLMHPSPFDNRVARRF---KRALRQADSMGIRVGTFLRRYPMMRVSV 495
              ::..|..:.    ..|:|.:.:  :..:|..:   ::|....|...||:|.||||||:.||.|
  Rat   639 --MSGVDSGEGTRLRNVPVLFNDT--ETNLAGMYGKVRKAASSIDQFSIRLGIFLRRYPIARVFV 699

  Fly   496 IVYVALLHLWVMFVLLSTTP 515
            |:|:||||||||.|||:.:|
  Rat   700 IIYMALLHLWVMIVLLTYSP 719

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Golgin84NP_651250.2 Golgin_A5 13..505 CDD:255554 175/713 (25%)
Golga5NP_001028237.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 88..202 25/113 (22%)
Smc <231..565 CDD:224117 81/342 (24%)
Golgin_A5 418..723 CDD:401659 102/318 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166352345
Domainoid 1 1.000 153 1.000 Domainoid score I4217
eggNOG 1 0.900 - - E1_KOG4677
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 165 1.000 Inparanoid score I4096
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1325011at2759
OrthoFinder 1 1.000 - - FOG0005421
OrthoInspector 1 1.000 - - oto97949
orthoMCL 1 0.900 - - OOG6_107022
Panther 1 1.100 - - LDO PTHR13815
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X5783
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1312.760

Return to query results.
Submit another query.