DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG6432 and Acsm3

DIOPT Version :9

Sequence 1:NP_001287502.1 Gene:CG6432 / 42901 FlyBaseID:FBgn0039184 Length:674 Species:Drosophila melanogaster
Sequence 2:XP_006230168.1 Gene:Acsm3 / 24763 RGDID:62086 Length:581 Species:Rattus norvegicus


Alignment Length:652 Identity:158/652 - (24%)
Similarity:259/652 - (39%) Gaps:144/652 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 DP---LYLKAYRQSVQNPAAFWEEQGNLLDWDRP-----WEKVLDN-----------SNPPFTKW 70
            ||   || |.||.::....:.:|...:....:.|     .:.|||.           |||.|  |
  Rat    17 DPRRILY-KDYRTAIPQNFSNYESMKHDFKIEIPEYFNFAKDVLDQWTNTEKTGKRLSNPAF--W 78

  Fly    71 YVGGYLNACYNSIDRHILAGRGSNVALIHDSPLTGTLRRVTYQELYDQIVLLAGGLAK------- 128
            :|.                |.|..|             |.:::||        |.|::       
  Rat    79 WVD----------------GNGKEV-------------RWSFEEL--------GSLSRKFANILT 106

  Fly   129 --LGVVKGDRVVIYMPLIPETIIAMLAIVRLGAIHSVVFGG---FAARELCSRIEHVEPKLVIAS 188
              ..:.:||||::.:|.|||..:|.:|.:|.|   :|:..|   ...:::..|::..:.|.:|..
  Rat   107 EACSLQRGDRVMVILPKIPEWWLANVACLRTG---TVLIPGTTQLTQKDILYRLQSSKSKCIITD 168

  Fly   189 NVGVEPGKVVPYLDI-------LHSAISMSRWRPPQRNIIFRRDNVSPDTTKLDPLTDVLWSDIL 246
            :.      :.|.:||       |||.:.:|:         ..|:.               |.::.
  Rat   169 DT------LAPAVDIVAAKCENLHSKLIVSQ---------HSREG---------------WGNLK 203

  Fly   247 KMAE-GERPIACVPIEANDPLYILYTSGTTDKPKGVLRTIGGHLVALVYTLRTLYGINPGHTWWA 310
            :|.: ......||..:.|:.:.|.:|||||..||.:..|.....:.|....|....:......|.
  Rat   204 EMMKYASDSHTCVDTKHNELMAIYFTSGTTGPPKMIGHTHSSFGLGLSVNGRFWLDLIASDVMWN 268

  Fly   311 ASDMGWVVGHSYICYGPLCLGA-TSVMYEGKPDRTPDPGQYFRIIDQYQVRSIFSVPTSFRVIRR 374
            .||.||........:.|...|| ....|..:.|.|    ...:.:.::.:....|.||::|::.:
  Rat   269 TSDTGWAKSAWSSVFSPWTQGACVFAHYLPRFDST----SILQTLSKFPITVFCSAPTAYRMLIQ 329

  Fly   375 ADPDISYGRQYSMKSLRAIFIAGEHCDYET-KSWIEKTFKVPVLNHWWQTETGSAVTATCLGFQ- 437
            .|    ..|.|...||:....|||..:.|. :.|.:|| .:.:...:.||||    ...|..|: 
  Rat   330 ND----ITRSYKFNSLKHCVSAGEPINPEVMEQWKKKT-GLDIYEGYGQTET----VLICGNFKG 385

  Fly   438 QNLSPPTYSTGLPLMGYDVKILKADGSEAQTSELGRIALK-LPLPPGNMATLY-----KNEELFR 496
            ..:.|.  |.|.|...::|:||..:|:.....:.|.||:: ||..|..:.|.|     |.....|
  Rat   386 MKIKPG--SMGKPSPAFNVEILDENGTILPPGQEGDIAVQVLPDRPFGLFTHYVDNPSKTASTLR 448

  Fly   497 TLYFQKFPGYYDTMDAGYKDERGYIFVTARDDDVINVAGHRLSTSSLEDAVLRHPDVVDVAVFGV 561
                   ..:|.|.|.||.||.||.:..||.||||..:|:|:....:|.|::.||.:.:.||...
  Rat   449 -------GNFYITGDRGYMDEDGYFWFVARSDDVILSSGYRIGPFEVESALIEHPSIAESAVVSS 506

  Fly   562 PEATKGQVPLCLYIPVENCKKTD-AKLSTEIIKLIRDVVGPIAAFRLVTSVNNLPRTRSGKTMRK 625
            |:..:|:|.....:...:.|..| .:|..||.:.::....|....|.:..:..||:|.|||..|.
  Rat   507 PDPIRGEVVKAFIVLNPDYKLHDQEQLKKEIQEHVKKTTAPYKYPRKIEFIEELPKTVSGKVKRN 571

  Fly   626 AM 627
            .:
  Rat   572 EL 573

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6432NP_001287502.1 prpE 28..657 CDD:182517 155/646 (24%)
PrpE 37..651 CDD:213314 151/637 (24%)
Acsm3XP_006230168.1 Acs 45..575 CDD:223442 150/623 (24%)
AFD_class_I 48..578 CDD:302604 150/620 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0365
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

Return to query results.
Submit another query.