DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rrp5 and PDE338

DIOPT Version :10

Sequence 1:NP_651245.1 Gene:Rrp5 / 42899 FlyBaseID:FBgn0039182 Length:1430 Species:Drosophila melanogaster
Sequence 2:NP_177317.2 Gene:PDE338 / 843502 AraportID:AT1G71720 Length:500 Species:Arabidopsis thaliana


Alignment Length:454 Identity:92/454 - (20%)
Similarity:158/454 - (34%) Gaps:139/454 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   248 KSQNE----TNLDYILPGSIVKFKVAKHLKDGLKGSIMNESFSAYV------------------N 290
            ||:||    .:.|.||. ..:||...:...:|::..:.:|:....|                  |
plant   106 KSENEESGKADDDAILE-PFLKFFKPEEEGEGIESEVSDETDRVSVEYYDPKPGDFVVGVVVSGN 169

  Fly   291 EHHL-----ANALDTLDAYELNEDYNARVLYVMPLTKLVYLTLNLDIKTGAAVAKDQDEEEQEVE 350
            |:.|     |:.|.|:...|:...|:..:.|:  |..|.|......:.....:.||.||..:..|
plant   170 ENKLDVNIGADMLGTMLTKEILPLYDKELDYL--LCDLKYDAEEFLVNGKMGIVKDDDEGVEIAE 232

  Fly   351 -------PIKVGSVVEKAKVLRLGSGGVVLLLNKKLKGIISYGSIRGNFKGNYDKDEVLSKYGRK 408
                   .:::|:|| .|:||.....|..||.:::.                         :.|.
plant   233 FARQGRPVVEIGTVV-FAEVLGRTLSGRPLLSSRRY-------------------------FRRI 271

  Fly   409 TKHKVRILGYDVIESLYYCSDDPNVVNEKLFCLEDINAGDLVT-----AKIFKKDDKIKGWSVRI 468
            ..|:||     .|:.|    ::|..|.     :.:.|.|.|:|     .....|.:.:|      
plant   272 AWHRVR-----QIKQL----NEPIEVK-----ITEWNTGGLLTRIEGLRAFIPKQELVK------ 316

  Fly   469 GKVNGILEQFYLAPNVRYDVGQSLKCRVLEVNAERKICYVSNRAEYLGKGIKILTDYASAHVGNV 533
             |||...|       ::.:||:....::..:|.::....:|.         |:..:......|.:
plant   317 -KVNTFTE-------LKENVGRRFLVQITRLNEDKNDLILSE---------KVAWEKLYLREGTL 364

  Fly   534 YMGTVVRCEDTYVLVKFGNGIK-GVLHRQNLKENSSFFEGQTTKFRILTRNKDQITLTLPEDKFQ 597
            ..||||:.......||.|:..: |:||..|                 :||.:    :....|..|
plant   365 LEGTVVKILPYGAQVKLGDSSRSGLLHISN-----------------ITRRR----IGSVSDVLQ 408

  Fly   598 LGEICPVEITNAL--------DAGLEVKITFAAEDDE----EDEDGNPKLEEFVGLIPLRLLSD 649
            :.|...|.:..:|        .|.||.:......|.|    |.|:...|..|.:.|:....:||
plant   409 VDESVKVLVVKSLFPDKISLSIADLESEPGLFISDREKVFTEAEEMAKKYREKMPLVATSPISD 472

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rrp5NP_651245.1 S1_Rrp5_repeat_hs1_sc1 71..165 CDD:240198
S1_like 172..243 CDD:471952
S1_like 261..327 CDD:471952 17/88 (19%)
S1 530..591 CDD:197648 14/61 (23%)
PTZ00121 <981..>1220 CDD:173412
LapB 1134..1344 CDD:442196
TPR repeat 1320..1350 CDD:276809
TPR repeat 1355..1382 CDD:276809
PDE338NP_177317.2 RpsA 154..>437 CDD:440305 71/368 (19%)
Blue background indicates that the domain is not in the aligned region.

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