DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Nab2 and NAB2

DIOPT Version :9

Sequence 1:NP_651243.1 Gene:Nab2 / 42897 FlyBaseID:FBgn0028471 Length:1004 Species:Drosophila melanogaster
Sequence 2:NP_011393.3 Gene:NAB2 / 852755 SGDID:S000003090 Length:525 Species:Saccharomyces cerevisiae


Alignment Length:570 Identity:112/570 - (19%)
Similarity:183/570 - (32%) Gaps:222/570 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly   546 EEEYTPSLMT----------------EGVETYVPQLLTN-------VDELDLHISSHDEPSPN-- 585
            :|:||.:|..                :.|..|:..|:.|       ||||   .|..|..|.:  
Yeast     3 QEQYTENLKVIVAEKLAGIPNFNEDIKYVAEYIVLLIVNGGTVESVVDEL---ASLFDSVSRDTL 64

  Fly   586 SGALKTQFVVTLNGDKAL-GGKNVKGGASRKRPSNSRKRSTSPVSTPQVSSSNIEPTSTTVDKRR 649
            :..::|.|...    :|| .|::.:...|:.|..|::....|.::..|                 
Yeast    65 ANVVQTAFFAL----EALQQGESAENIVSKIRMMNAQSLGQSDIAQQQ----------------- 108

  Fly   650 RSNRDRSFSPSPRQSSGSPSLPTTRSINRNEVRRQPQEIKKIIIKNDTDEDDEMHGSPKKRSPNK 714
                      ..:|....|      .|.:.:.::|||:           :..:......::.| :
Yeast   109 ----------QQQQQQQQP------DIAQQQPQQQPQQ-----------QPQQQPQQQPQQQP-Q 145

  Fly   715 RQPAAANGHKDNKDKGKIEEGSTTPPL-PAKPKARAEKKASSKEKSVRSNSAETSSAA--KSVSA 776
            :||.              ::....|.| |.:|:...:            |:.:|.:.|  ..:||
Yeast   146 QQPQ--------------QQPQQQPQLQPLQPQLGTQ------------NAMQTDAPATPSPISA 184

  Fly   777 -STSVSTTTKAKHTPI----RFTLKSEDEPSASKKRRSGSPDRDVAAPERRRVSIRNPEDRKYDN 836
             |..|:.....:..|:    |||.:...  :..|.||.|.......         ||....:::.
Yeast   185 FSGVVNAAAPPQFAPVDNSQRFTQRGGG--AVGKNRRGGRGGNRGG---------RNNNSTRFNP 238

  Fly   837 L-PALSAVSVDSTVLKVNKPKERCKYHPNC-TKQFCEYYHPTAPCKSFPNC-KFADKCMYSHPK- 897
            | .||......:......|.:.||:..|:| ..:.|.:.|||..|..:||| |....|.:.||. 
Yeast   239 LAKALGMAGESNMNFTPTKKEGRCRLFPHCPLGRSCPHAHPTKVCNEYPNCPKPPGTCEFLHPNE 303

  Fly   898 ------------------------------------CKF-------------------------- 900
                                                |||                          
Yeast   304 DEELMKEMERTREEFQKRKADLLAAKRKPVQTGIVLCKFGALCSNPSCPFGHPTPANEDAKVIDL 368

  Fly   901 -----DMACMSIDCNYAHGGQRDLSHV-----QLAAPPLSSHVIPVQNYKSISAPVTSTTATT-- 953
                 ::.|.:.:|..||.....:..|     :.||||      ||:  ||:......|..|.  
Yeast   369 MWCDKNLTCDNPECRKAHSSLSKIKEVKPISQKKAAPP------PVE--KSLEQCKFGTHCTNKR 425

  Fly   954 ----------MCKYYPNCSKLGCTFYHP--KPCRFGKNCVNKLECIFYHP 991
                      ||:...||:::.|.|.||  :.||||.||.| :.|:|.||
Yeast   426 CKYRHARSHIMCREGANCTRIDCLFGHPINEDCRFGVNCKN-IYCLFRHP 474

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nab2NP_651243.1 zf-CCCH_2 878..896 CDD:291282 6/18 (33%)
NAB2NP_011393.3 Nab2 1..101 CDD:402904 23/104 (22%)
Nab2p_Zf1 252..278 CDD:408075 6/25 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C157344793
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3702
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR14738
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2202
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
65.870

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