DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nab2 and Zc3h14

DIOPT Version :9

Sequence 1:NP_651243.1 Gene:Nab2 / 42897 FlyBaseID:FBgn0028471 Length:1004 Species:Drosophila melanogaster
Sequence 2:NP_001029123.1 Gene:Zc3h14 / 192359 RGDID:621850 Length:736 Species:Rattus norvegicus


Alignment Length:1060 Identity:263/1060 - (24%)
Similarity:391/1060 - (36%) Gaps:396/1060 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 LGSEIGQKMRSAVKAKLLELGTGGSAGFIDDELPDYVMVMVANKRTKQQMNAELNLFLGDQTDLF 69
            :|:||.:|:|||:|.||.|||     .::|:|||||:|||||||:::.||..:|:||||:.|..|
  Rat     3 IGTEISRKIRSAIKGKLQELG-----AYVDEELPDYIMVMVANKKSQDQMTEDLSLFLGNNTIRF 62

  Fly    70 VTWLHEVLQKLQEVTLPTSS-------------ASSKKRKSRGQEKDKKGSKKDKRPHRKSGDEL 121
            ..|||.||.||:.||...||             .|:|...|||          |:|.|     |.
  Rat    63 TVWLHGVLDKLRSVTTEPSSLKSPDTSIFDSNVPSNKSSFSRG----------DERRH-----EA 112

  Fly   122 SEPQPSSSDAMPIVSSITDVFAEELLEKAKKTMDIDLSAKDEILHKKKNRKSIEDEDASANRALD 186
            :.|..:.|.:.|                .|:...:..|:::   ||..|.:...|:.||      
  Rat   113 AIPPLAVSSSRP----------------EKRDSRVSTSSQE---HKSTNVRHSYDDGAS------ 152

  Fly   187 VPAVSEIISTTIGVNRQKDLAELAEIQKKIHAAKKHLRQIGEIGDESDE-YDEDL-----LNLSA 245
                :.::||.      |.|.|.|..:..|           :|..|.|: .||||     .:||.
  Rat   153 ----TRLMSTV------KPLREPAPSEDVI-----------DIKPEPDDLIDEDLNFVQENSLSQ 196

  Fly   246 REESVDQEPEEDPPKLE--APP--RKAKSPIIFNRREKTPEKRPEAEPEIDSRQEEAEEKSPKKD 306
            ::.:|........|.:|  .||  |.|.:....||            |::..:|           
  Rat   197 KKPTVTLTYGSSRPSIEIYRPPASRNADTGTHLNR------------PQLQQQQ----------- 238

  Fly   307 SSADKAKEDRSERRSVHDR--------LGSKAQTPADRSQRNQKELYVPTHRRRSEPEATKERSQ 363
            ||...||:...:...|::.        |||...|            |.|..              
  Rat   239 SSTHTAKQLDGQSSQVYEAGRLCEPEVLGSVEDT------------YSPFF-------------- 277

  Fly   364 RERTRERRSSRDTSRDTNRNQRQRRSPSPEAPSTKQRIVSQVIVA---VNKPPEPSDDEDMAEKP 425
                   |::.|.......|.|:|:.|          :||.|:..   .:...|..:|||...: 
  Rat   278 -------RNNLDKMNIEEENFRKRKLP----------VVSSVVKVKRFSHDGEEEEEDEDYGTR- 324

  Fly   426 VNSV-----IKVKP--RPNVSPRRQACKNLLLRAVADAQRSTILAKTST-----QKEDEDVGKII 478
            |.|:     :..||  ||::.|.:||.|||:|:|:::||.|  :.||:.     ||:...|..  
  Rat   325 VGSLSSSVSVPAKPERRPSLPPSKQANKNLILKAISEAQES--VTKTTNYPAVPQKQTLPVAP-- 385

  Fly   479 SSLGKRKSEDKNDQIRKRNRERKRRKRSAQGNELFRRTTRELVVNVTQRDGKRERRSNERRAEIK 543
                                    |.|::|         .|::..:.|...:..|.|       .
  Rat   386 ------------------------RTRTSQ---------EEVLAEMVQGQNRAPRIS-------P 410

  Fly   544 VVEEEYTPSLMTEGVE-TYVPQLLT-------NVDELDLHISSHDEPSPNSGALKTQFVVTLNGD 600
            .|:||.......|.:| |...|||:       .||.::|....:|..|......:: |::     
  Rat   411 PVKEEEAKGDNAEKIEGTQQRQLLSRLQIDPVTVDTMELSQDYYDMESMVHADTRS-FIL----- 469

  Fly   601 KALGGKNVKGGASRKRPSNSRKRSTSPVSTPQVSSSNIEPTSTTVDKRRRSNRDRSFSPSPRQSS 665
                          |:|    |.|...|.||                    |:|.....:.....
  Rat   470 --------------KKP----KLSEEIVVTP--------------------NQDSGMKTADALRV 496

  Fly   666 GSPSLPTTRSINRNEVRRQPQEIKKIIIKNDTDEDDEMHGSPKKRSPNKRQPAAANGHKDNKDKG 730
            .|..|..||.:.:.:....|    |.|:..|        |.|   ||        .|:..::::.
  Rat   497 LSGHLMQTRDLVQPDKPASP----KFIVTLD--------GVP---SP--------PGYMSDQEEE 538

  Fly   731 KIEEGSTTPPLPAKPKARAEKKASSKEKSVRSNSAETSSAAKSVSASTSVSTTTKAKHTPIRFTL 795
            ...||                                                           :
  Rat   539 MCFEG-----------------------------------------------------------M 544

  Fly   796 KSEDEPSASKKRRSGSPDRDVAAPERRRVSIRNPEDRKYDNLPALSAVSVDSTVLKV-NKPK--- 856
            |..::.|||.|...|     :..|::..:..|..||      |..|..:.:.|.|.| .||:   
  Rat   545 KPVNQTSASNKGLRG-----LLHPQQLHLLSRQLED------PDGSFSNAEMTDLSVAQKPEKLL 598

  Fly   857 ERCKYHPNCTK-QFCEYYHPTAPCKSFPNCKFADKCMYSHPKCKFDMACMSIDCNYAHGGQRDLS 920
            |||||.|.|.. ..|.|:||.:|||:|||||||:||::.||.||:|..|...||.:.|..:|.  
  Rat   599 ERCKYWPACKNGDECVYHHPISPCKAFPNCKFAEKCLFVHPNCKYDAKCTKADCPFTHMSRRG-- 661

  Fly   921 HVQLAAPPLSSHVIPVQNYK-SISAPVTSTTATTMCKYYPNCSKLGCTFYHPKPCRFGKNCVNKL 984
                          ||...| ::|:|..|:.. ..|:|:|.|.|:.|.|||||.|||...| .:.
  Rat   662 --------------PVLTPKPAVSSPAPSSNG-QFCRYFPACKKMECPFYHPKHCRFNTQC-TRP 710

  Fly   985 ECIFYHPEM----QSKFKWV 1000
            :|.||||.:    :...||:
  Rat   711 DCTFYHPTITVPPRHALKWI 730

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nab2NP_651243.1 zf-CCCH_2 878..896 CDD:291282 12/17 (71%)
Zc3h14NP_001029123.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 77..153 23/119 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 308..350 11/42 (26%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 367..386 5/44 (11%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 400..420 6/26 (23%)
zf-CCCH_2 621..639 CDD:291282 12/17 (71%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166345891
Domainoid 1 1.000 103 1.000 Domainoid score I6645
eggNOG 1 0.900 - - E1_KOG3702
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 236 1.000 Inparanoid score I3315
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D382262at33208
OrthoFinder 1 1.000 - - FOG0004764
OrthoInspector 1 1.000 - - oto98839
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR14738
Phylome 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X5101
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1211.950

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