DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment crb and Cntnap2

DIOPT Version :9

Sequence 1:NP_001247284.1 Gene:crb / 42896 FlyBaseID:FBgn0259685 Length:2253 Species:Drosophila melanogaster
Sequence 2:NP_001004357.2 Gene:Cntnap2 / 66797 MGIID:1914047 Length:1332 Species:Mus musculus


Alignment Length:977 Identity:201/977 - (20%)
Similarity:319/977 - (32%) Gaps:330/977 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly  1065 QIDDYDCDCDANYGG------------KNCSVLLKGCDQNPCLNGGACLPYLINEVTHLYNCTCE 1117
            :.|..|.|.:..:||            ||    .|||.::...||       :|..........|
Mouse   304 EFDYLDLDYEITFGGIPFSGKPSSSNRKN----FKGCMESINYNG-------VNITDLARRKKLE 357

  Fly  1118 NGFQGD---KCEKTTTLSMV--ATSLISVTTE-REEGYDINLQFRTTLPNGVLAFGTTGEKNEPV 1176
            ....|:   .|.:..|:.:.  |||.:.|... .::.:.::.||||..|:|:|.|....:....|
Mouse   358 PSNMGNLSFSCVEPYTVPVFFNATSYLEVPGRLNQDLFSVSFQFRTWNPSGLLLFSHFADNLGNV 422

  Fly  1177 SYILELINGRLNLH-SSLLNKWEGVFI--GSKLNDSNWHKVFVAINTSHLVLSANDEQAIFPVGS 1238
            .  ::|:..::.:| ::...|...:.|  ||.|||..||:|......:..||:.:.::|      
Mouse   423 E--IDLVESKVGVHINNTQTKTSQIDISSGSGLNDGQWHEVRFLAKENFAVLTIDGDEA------ 479

  Fly  1239 YETANNSQPSFPRT----YLGGTIPNLKSYLRHLTH------QPSAFVGCMQDIMVNGKWIFPDE 1293
             .....:.|...:|    :.||       :|.|:.:      ||| |.||||.|.|       |:
Mouse   480 -SAVRTNSPLQVKTGEKYFFGG-------FLNHMNNASYSALQPS-FQGCMQLIQV-------DD 528

  Fly  1294 QDAN---ISYTK---LENVQ-SGCPRTEQCKPNPCHSNGECTDLWHTFACHCPRP-FFGHTCQHN 1350
            |..|   :::.|   ..||. ..|...::|.||.|...|:|:..|.:|.|.|... :.|.|| ||
Mouse   529 QLVNLYEVAHRKPGSFANVTIDMCAIIDRCVPNHCEHGGKCSQTWDSFKCTCDETGYSGATC-HN 592

  Fly  1351 MTAATFGHENTTHSAVIVETTDVARRAIRSILDISMFIRTREPTGQVFYLGTD------PRKAPT 1409
            .               |.|.:..|.:.:..             |...:::..|      |.|...
Mouse   593 S---------------IYEPSCEAYKHLGQ-------------TSNYYWIDPDGSGPLGPLKVYC 629

  Fly  1410 KNIGDSYVAAKLHGGELLVKMQFSG-TPEAYTVGGQKLDNGYNHLIEVVRNQTLVQVK--LNGTE 1471
            ....|.......|  :|.::....| .||.|:|            .:::.:.::.|:.  .:..|
Mouse   630 NMTEDKVWTIVSH--DLQMQTTVVGYNPEKYSV------------TQLIYSASMDQISAITSSAE 680

  Fly  1472 Y----------FRKTLST---------TGLLDAQVLYLGGPAPTRESLLGATTEPGIIPVPGAGI 1517
            |          ..:.|:|         .|..:.:..|.||            :||||... ..||
Mouse   681 YCEQYVSYFCRMSRLLNTPDGSPYTWWVGKANEKHYYWGG------------SEPGIQKC-ACGI 732

  Fly  1518 PIEDTTVPK-----EADDSRDYFKGIIQDVKVSNGSLNLIVEMYSLNVTDVQVNAKPLGAVTIDR 1577
            . .:.|.||     :||     :|...:|....:...:|.|....:..||.|.:...|       
Mouse   733 E-RNCTDPKYYCNCDAD-----YKQWRKDAGFLSYKDHLPVSQVVVGDTDRQGSEAKL------- 784

  Fly  1578 ASVLPGEVSDDLCRKNPCLHNAECRNTWNDYTCKCPNGY------KGKNCQEIEFCQHVTCPGQS 1636
             ||.|.....|             ||.||..:...|:.|      :|:...:|.|......|...
Mouse   785 -SVGPLRCQGD-------------RNYWNAASFPNPSSYLHFSTFQGETSADISFYFKTLIPRGV 835

  Fly  1637 LCQNLDDGYECVTNTTFTGQERSPLAFFYFQEQQSDDIVSEASPKQTLKPVIDIAFRTRAGGTLL 1701
            ..:||.       ||.|.                          |..||...:::|.        
Mouse   836 FLENLG-------NTDFI--------------------------KLELKSATEVSFS-------- 859

  Fly  1702 YIDNVDGFFEIGVNGGRVTITWKLSALHFGESARFEKENTDGEWSRIYLRAHNSKLEGGWKGWES 1766
                    |::|  .|.|.|.           .|......|.:|.|:       ..|...|....
Mouse   860 --------FDVG--NGPVEIV-----------VRSPSPLNDDQWHRV-------TAERNVKQASL 896

  Fly  1767 MVDPTPAFSTDIDQAAFQ--SLIATSTQVYLGGMPESRQARGSTLSAQQGSQFKGCVGEARVGDL 1829
            .||..|   ..|.:|..:  :.:...:|:::||           ...|||  |.||:...|:..:
Mouse   897 QVDRLP---QQIRKAPTEGHTRLELYSQLFVGG-----------AGGQQG--FLGCIRSLRMNGV 945

  Fly  1830 LLPYFSMAELYSRTNVSVQQKAQFRLNATRPEEGC---ILCFQSDCKNDGFCQSPSDEYACTC-Q 1890
            .|      :|..|..|:...|:           ||   ...:.::|:|.|.|......|:|.| .
Mouse   946 TL------DLEERAKVTSGFKS-----------GCSGHCTSYGANCENGGKCIEKYHGYSCDCSN 993

  Fly  1891 PGFEGDDCGTDIDECLNTECLNNGTCINQVAAFFCQCQ--------PGFEGQHCEQNIDECADQP 1947
            ..::|..|..|                  |.|||.:..        |....:......:..|||.
Mouse   994 TAYDGTFCNKD------------------VGAFFEEGMWLRYNFQAPAVTARDTGSRAENSADQQ 1040

  Fly  1948 CH 1949
            .|
Mouse  1041 QH 1042

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
crbNP_001247284.1 LamG 91..228 CDD:238058
EGF_CA 386..423 CDD:238011
EGF_CA 425..460 CDD:238011
EGF 466..495 CDD:278437
EGF 605..633 CDD:278437
EGF_CA 716..750 CDD:238011
EGF_CA 753..789 CDD:238011
EGF_CA 792..828 CDD:238011
EGF_CA 830..865 CDD:238011
EGF_CA 868..905 CDD:238011
EGF_CA 907..943 CDD:238011
EGF_CA 1009..1045 CDD:238011
EGF_CA 1047..1082 CDD:238011 6/28 (21%)
Laminin_G_1 1155..1290 CDD:278483 39/147 (27%)
EGF 1316..1346 CDD:278437 11/30 (37%)
Laminin_G_1 1388..1550 CDD:278483 34/194 (18%)
EGF_CA <1593..1622 CDD:238011 7/34 (21%)
Laminin_G_2 1692..1828 CDD:280389 27/137 (20%)
EGF_CA 1901..1937 CDD:238011 6/43 (14%)
EGF_CA 1939..1974 CDD:238011 4/11 (36%)
EGF_CA 2057..2094 CDD:238011
EGF_CA 2096..2133 CDD:238011
EGF_CA 2137..2175 CDD:238011
Cntnap2NP_001004357.2 FA58C 34..181 CDD:214572
FA58C 58..180 CDD:238014
Laminin_G_2 216..345 CDD:280389 12/51 (24%)
LamG 375..527 CDD:238058 44/175 (25%)
EGF_CA 555..590 CDD:238011 11/34 (32%)
COLFI 609..>632 CDD:295304 3/22 (14%)
LamG 800..943 CDD:238058 41/227 (18%)
EGF 967..>992 CDD:278437 6/24 (25%)
LamG 1051..1187 CDD:214598
4.1m 1283..1301 CDD:128590
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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