DRSC/TRiP Functional Genomics Resources

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Protein Alignment crb and Scube2

DIOPT Version :9

Sequence 1:NP_001247284.1 Gene:crb / 42896 FlyBaseID:FBgn0259685 Length:2253 Species:Drosophila melanogaster
Sequence 2:NP_064436.2 Gene:Scube2 / 56788 MGIID:1928765 Length:968 Species:Mus musculus


Alignment Length:429 Identity:126/429 - (29%)
Similarity:169/429 - (39%) Gaps:142/429 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly  1860 PEEGCILCFQ--SDCKNDGFCQSPSDEYACTCQPGFEGD--DCGTDIDECLNTECLNNG---TCI 1917
            |.|....|.|  .||..|..||:....|.|:|:||::|:  .| .|:|||.||  ||.|   .|:
Mouse    40 PSEDVDECAQGLDDCHADALCQNTPTSYKCSCKPGYQGEGRQC-EDMDECDNT--LNGGCVHDCL 101

  Fly  1918 NQVAAFFCQCQPGF----EGQHCEQNIDECADQPCHNGG---NCTDLIASYVCDCPEDYMGPQCD 1975
            |....:.|.|..||    :|.:| .::|||.:   :|||   .||::|.||.|.|.|.:....  
Mouse   102 NIPGNYRCTCFDGFMLAHDGHNC-LDMDECLE---NNGGCQHICTNVIGSYECRCKEGFFLSD-- 160

  Fly  1976 VLKQMTC-----ENEPCRN-----GSTCQNGFNASTGNNFTCTCVPGF----------------- 2013
              .|.||     |...|.|     |..|:.....|.    .|.|.|||                 
Mouse   161 --NQHTCIHRSEEGLSCMNKDHGCGHICKEAPRGSV----ACECRPGFELAKNQKDCILTCNHGN 219

  Fly  2014 -----------EGPLC----------DIPFC-------------------------------EIT 2026
                       |||.|          |...|                               |..
Mouse   220 GGCQHSCEDTAEGPECSCHPRYRLHADGRSCLEQEGTVLEGTESNATSVADGDKRVKRRLLMETC 284

  Fly  2027 PCDNGG---LCLTTGAVPMCKCSLGYT----GRLCEQDINECESNPCQNGG---QCKDLVGRYEC 2081
            ..:|||   .|..|.....|.|..|:|    |:.| :||:||::   :|||   .||:.||.::|
Mouse   285 AVNNGGCDRTCKDTSTGVHCSCPTGFTLQVDGKTC-KDIDECQT---RNGGCNHFCKNTVGSFDC 345

  Fly  2082 DCQGTGFEGIRCE---NDIDECNMEG--DYCGGLGRCFNKPGSFQCICQKPYCGAYCNFTDPCNA 2141
            .|: .||:.:..|   .|:|||::|.  |:     .|.|.||:|.|.|...|  ...:||. |..
Mouse   346 SCK-KGFKLLTDEKSCQDVDECSLERTCDH-----SCINHPGTFICACNPGY--TLYSFTH-CGD 401

  Fly  2142 TDLCS-NGGRCVESC-GAKPDYYCECPEGFA----GKNC 2174
            |:.|| |.|.|.:.| .....|.|:|..||.    .|:|
Mouse   402 TNECSVNNGGCQQVCINTVGSYECQCHPGFKLHWNKKDC 440

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
crbNP_001247284.1 LamG 91..228 CDD:238058
EGF_CA 386..423 CDD:238011
EGF_CA 425..460 CDD:238011
EGF 466..495 CDD:278437
EGF 605..633 CDD:278437
EGF_CA 716..750 CDD:238011
EGF_CA 753..789 CDD:238011
EGF_CA 792..828 CDD:238011
EGF_CA 830..865 CDD:238011
EGF_CA 868..905 CDD:238011
EGF_CA 907..943 CDD:238011
EGF_CA 1009..1045 CDD:238011
EGF_CA 1047..1082 CDD:238011
Laminin_G_1 1155..1290 CDD:278483
EGF 1316..1346 CDD:278437
Laminin_G_1 1388..1550 CDD:278483
EGF_CA <1593..1622 CDD:238011
Laminin_G_2 1692..1828 CDD:280389
EGF_CA 1901..1937 CDD:238011 16/42 (38%)
EGF_CA 1939..1974 CDD:238011 14/37 (38%)
EGF_CA 2057..2094 CDD:238011 15/39 (38%)
EGF_CA 2096..2133 CDD:238011 14/38 (37%)
EGF_CA 2137..2175 CDD:238011 15/44 (34%)
Scube2NP_064436.2 EGF_3 47..82 CDD:289699 13/34 (38%)
FXa_inhibition 93..124 CDD:291342 9/30 (30%)
FXa_inhibition 130..165 CDD:291342 13/41 (32%)
FXa_inhibition 175..211 CDD:291342 10/39 (26%)
FXa_inhibition 215..250 CDD:291342 5/34 (15%)
FXa_inhibition 284..319 CDD:291342 10/34 (29%)
vWFA <310..359 CDD:294047 19/53 (36%)
vWFA <357..393 CDD:294047 15/42 (36%)
FXa_inhibition 405..440 CDD:291342 12/34 (35%)
GCC2_GCC3 670..717 CDD:285001
GCC2_GCC3 726..773 CDD:285001
CUB 778..889 CDD:238001
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

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