DRSC/TRiP Functional Genomics Resources

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Protein Alignment crb and wry

DIOPT Version :9

Sequence 1:NP_001247284.1 Gene:crb / 42896 FlyBaseID:FBgn0259685 Length:2253 Species:Drosophila melanogaster
Sequence 2:NP_995611.2 Gene:wry / 33361 FlyBaseID:FBgn0051665 Length:1157 Species:Drosophila melanogaster


Alignment Length:843 Identity:196/843 - (23%)
Similarity:302/843 - (35%) Gaps:249/843 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   533 PTTTTPTPEQEPTTTPRTTPNPNPAIPNTLTTTTKIPPITT---------SRTLVGTTTGSRRPP 588
            |||||.......||...||         |..|||::|..||         ::.|:...|    ||
  Fly   432 PTTTTAAGSTATTTAESTT---------TAATTTRLPATTTGKYQKELKRAKLLLKALT----PP 483

  Fly   589 QQPLQSPTQRSASLNACPQENCLNGGTCLGYSGNYSCICASGYTGYNCQTSTGDGASALA----- 648
            :...:|....|::.:           |....:...:.:.|:..|..:....|...:..:|     
  Fly   484 KSVDKSTASPSSTTS-----------TSTSTTTTMATLLATARTRPSAANPTKTASKPIARPRIL 537

  Fly   649 ------LTPINC---NATNGKCLNGGTCSMNGTHCYCAVGYSGDRCEKAENCSP----------L 694
                  :..:.|   |......|..|    |.||.......:.:.|:..|:|.|          :
  Fly   538 SRLQEKINSLECEIPNVPQDSHLWRG----NETHELLLPIVTTEHCKPDEHCVPNVLTWRGEAEI 598

  Fly   695 NCQEPMVCVQNQCLC-----PENKVCNQCATQPCQ---NGGECVDLPNGD--------------- 736
            ...:.::...|..:.     |.|......|||..|   :|.|..|:..|.               
  Fly   599 QSGDILIVEINDAMLNPSHEPNNTSSAVHATQVYQVTRSGHEHCDVTEGVLLDITPLVVDGRKLV 663

  Fly   737 --YECKCTRG----------WTGRTC-----GNDVDECTLHPKICGNGICKNEKG--SYKCYCTP 782
              |:...|.|          | |..|     ....|.|..:....|.|:|.:..|  .|:|.|..
  Fly   664 TLYDKDLTEGVNLLIVVSELW-GAQCVRLKVTTKTDNCGENADCSGKGVCYSNSGMEEYECQCCS 727

  Fly   783 GFTGVHCDSDVDECLSFPCLNGATC-----HNKINAYECVCQPGYEGENCEVDIDECGSNPCSNG 842
            ||.|.||: ::|.|...||.|...|     .::.|:|:|:|..||.|:||:.:.|.|....|.||
  Fly   728 GFAGPHCE-EIDACNPSPCTNNGICVDLSQGHEGNSYQCLCPYGYAGKNCQYESDPCNPAECMNG 791

  Fly   843 STCIDRINNFTCNCIPGMTGRICDIDIDDCVGDPCLNGGQCIDQLGGFRCDCSGTGYEGENCELN 907
            .:|:....:|.|:|.||.||.:|...:::|...||:: |.|:||..||||.|. .|:.||.|...
  Fly   792 GSCVGNSTHFRCDCAPGFTGPLCQHSLNECESSPCVH-GICVDQEDGFRCFCQ-PGFAGELCNFE 854

  Fly   908 IDECLSNPCTNGAKCLDRVKDYFCDCHNGYKGKNCEQDINECESNPCQYNGNCLERSNITLYQMS 972
            .:||.||||.||.:|:|.:..|.|.|..|:.|..|:..::.|.:.||.....|::..|       
  Fly   855 YNECESNPCQNGGECIDHIGSYECRCTKGFSGNRCQIKVDFCANKPCPEGHRCIDHGN------- 912

  Fly   973 RITDLPKVFSQPFSFENASGYECVCVPGIIGKNC----EININECDSNPCSKHGNCNDGIGTYTC 1033
                               .:.|.|..|..|.:|    .....:|:.|||:..|.|.....::.|
  Fly   913 -------------------DFSCECPGGRNGPDCNQMPRTYFQQCNVNPCTHGGTCWSSGDSFYC 958

  Fly  1034 ECEPGFEGTHCEINIDECDRYNPCQRGTCYDQ-------------IDDYDCDCDANYGGK--NCS 1083
            .|.||:.||.||                  |:             :||.:.   .|:..|  ..|
  Fly   959 ACRPGYTGTMCE------------------DEFVVETVVSSSEFIVDDANA---RNFNDKTFGSS 1002

  Fly  1084 VLLKGCDQ--NPCLNGG--ACLPYLINEVTHLYNCTCENGFQGDKCEKTTTLSMVATSLISVTTE 1144
            |:||...:  |.....|  |...:::..|..:.:|.....::     |.:|.|   ||.|.:   
  Fly  1003 VVLKSPIELHNAYFAAGVLAAAIFIVAVVVTICHCKVNQTYR-----KFSTRS---TSFIPI--- 1056

  Fly  1145 REEGYDINLQFRTTLPNGVLAFGTTGEKNEPVSYILELINGRLNLHSSLLNKWEGVFIGSKLNDS 1209
                                    .|....|      .:.|:||.|                   
  Fly  1057 ------------------------LGFSRRP------KVQGKLNKH------------------- 1072

  Fly  1210 NW--HKVFVAINTSHLVLSANDEQAIFPVGSYETANN--SQPSFPRTYLGGTIPNLKSYLRHL 1268
             |  .|...|.:::::|......:|....|..:...:  .||. .:|.|||.:.. :.:||||
  Fly  1073 -WLSGKGATATSSTNIVAPPGGPRAGGAAGPQQVTRHLPGQPQ-TQTTLGGQLQE-RPFLRHL 1132

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
crbNP_001247284.1 LamG 91..228 CDD:238058
EGF_CA 386..423 CDD:238011
EGF_CA 425..460 CDD:238011
EGF 466..495 CDD:278437
EGF 605..633 CDD:278437 2/27 (7%)
EGF_CA 716..750 CDD:238011 13/63 (21%)
EGF_CA 753..789 CDD:238011 12/37 (32%)
EGF_CA 792..828 CDD:238011 14/40 (35%)
EGF_CA 830..865 CDD:238011 13/34 (38%)
EGF_CA 868..905 CDD:238011 15/36 (42%)
EGF_CA 907..943 CDD:238011 15/35 (43%)
EGF_CA 1009..1045 CDD:238011 12/35 (34%)
EGF_CA 1047..1082 CDD:238011 5/49 (10%)
Laminin_G_1 1155..1290 CDD:278483 22/118 (19%)
EGF 1316..1346 CDD:278437
Laminin_G_1 1388..1550 CDD:278483
EGF_CA <1593..1622 CDD:238011
Laminin_G_2 1692..1828 CDD:280389
EGF_CA 1901..1937 CDD:238011
EGF_CA 1939..1974 CDD:238011
EGF_CA 2057..2094 CDD:238011
EGF_CA 2096..2133 CDD:238011
EGF_CA 2137..2175 CDD:238011
wryNP_995611.2 EGF_CA 737..777 CDD:238011 14/39 (36%)
EGF 783..812 CDD:278437 11/28 (39%)
EGF_CA 819..851 CDD:238011 15/33 (45%)
EGF_CA 856..890 CDD:238011 15/33 (45%)
EGF_CA 893..927 CDD:238011 9/59 (15%)
EGF_CA <941..970 CDD:238011 11/28 (39%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24044
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.010

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