Sequence 1: | NP_001247284.1 | Gene: | crb / 42896 | FlyBaseID: | FBgn0259685 | Length: | 2253 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001100652.1 | Gene: | Crb1 / 304825 | RGDID: | 1309947 | Length: | 1407 | Species: | Rattus norvegicus |
Alignment Length: | 1681 | Identity: | 505/1681 - (30%) |
---|---|---|---|
Similarity: | 734/1681 - (43%) | Gaps: | 361/1681 - (21%) |
- Green bases have known domain annotations that are detailed below.
Fly 644 ASALALTPIN--CNATNGKCL-----NGGTCSMNGTHCYCAVGYSGD---RCEKAEN-CSPLNCQ 697
Fly 698 EPMVCVQNQ------CLCPE-------NKVCNQCATQPCQNGGECVDLPNGDYECKCTRGWTGRT 749
Fly 750 CGNDVDECTLHPKICGNG-ICKNEKGSYKCYCTPGFTGVHCDSDVDECLSFPCLNGATCHNKINA 813
Fly 814 YECVCQPGYEGENCEVDIDECGSNPCSNGSTCIDRINNFTCNCIPGMTGRICDIDIDDCVGDPCL 878
Fly 879 NGGQCIDQLGGFRCDCSGTGYEGENCELNIDECLSNPCTNGAKCLDRVKDYFCDCHNGYKGKNCE 943
Fly 944 QDINECESNPCQYNGNCLERSNITLYQMSRITDLPKVFSQPFSFENASGYECVCVPGIIGKNCEI 1008
Fly 1009 NINECDSNPCSKHGNCNDGIGTYTCECEPGFEGTHCEINIDECDRYNPCQRGTCYDQIDDYDCDC 1073
Fly 1074 DANYGGKNCSVLLKGCDQNPCLNGGACLPYLINEVTHLYNCTCENGFQGDKCEKTTTLSMVATSL 1138
Fly 1139 ISVT----TEREEGYDINLQFRTTLPNGVLAFGTTGEKNEPVSYILELINGRLNLHSSLLNKWEG 1199
Fly 1200 -VFIGSKLNDSNWHKVFVAI-NTSHLVLSANDEQAIFPVGSYETANNSQP--SFPRTYLG----G 1256
Fly 1257 TIPNLKSYLRHLTHQPS--AFVGCMQDIMVNGKWIFPDEQDANISYTKLENVQSGCPRTEQCKPN 1319
Fly 1320 PCHSNGECTDLWHTFACHCPRPFFGHTCQHNMTAATFGHENTTHSAVIVETTDVARRAIRSILDI 1384
Fly 1385 SMFIRTREPTGQVFYLGTDPRKAPTKNIGDSYVAAKLHGGELLVKMQFSGTPEAYTVGGQKLDNG 1449
Fly 1450 YNHLIEVVRNQTLVQVKLNGTEYFRKTLSTTGLLD--------AQVLYLGGPAPTRESLLGATTE 1506
Fly 1507 PGIIPVPGAGIPIEDTTVPKEADDSRDYFKGIIQDVKVSNGSLNLIVEMYSLNVTDVQVNAKPLG 1571
Fly 1572 AVTIDRASVLPGEVSDDLCRKNPCLHNAECRNTWNDYTCKCPNGYKGKNCQEIEFCQHVTCPGQS 1636
Fly 1637 LCQNLDDGYECVTNTTFTGQERSPLAFFYFQEQQSDDIVSEASPKQTLKPVIDIAFRTR-AGGTL 1700
Fly 1701 LYIDNVDGFFEIGVNGGRVTITWK----LSALHFGESARFEKENTDGEWSRIYLRAHNSKLEGGW 1761
Fly 1762 KGWESMVDP---TPAFSTDI-DQAAFQ-SLIAT--------STQVYLGGMPESRQARGSTLSAQQ 1813
Fly 1814 GSQFKGCVGEARVGDLLLPYFSMAELYSRTNVSVQQKAQF-RLNATRPEEGCI---LCFQSDCKN 1874
Fly 1875 DGFCQSPSDEYACTCQPGFEGDDCGTDIDECLNTECLNNGTCINQVAAFFCQCQPGFEGQHCEQN 1939
Fly 1940 IDECADQPCHNGGNCTDLIASYVCDCPEDYMGPQC--DVLKQMTCENEPCRNGSTCQNGFNASTG 2002
Fly 2003 NNFTCTCVPGFEGPLCDIPFCEITPCDNGGLCLTTGAVPMCKCSLGYTGRLCEQDINECESNPCQ 2067
Fly 2068 NGGQCKDLVGRYECDCQGTGFEGIRCENDIDECNMEGDYCGGLGRCFNKPGSFQCICQKPYCGAY 2132
Fly 2133 CNFTDPCNATDLCSNGGRCVESCGAKPDYYCECPEGFAGKNCTAPITAKEDGPSTTDIAIIVIPV 2197
Fly 2198 VVVLLLIAGALLGTFLVMARNKRATRGTYSPSAQEYCNPRLEMDNVLKPPPEERLI 2253 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
crb | NP_001247284.1 | LamG | 91..228 | CDD:238058 | |
EGF_CA | 386..423 | CDD:238011 | |||
EGF_CA | 425..460 | CDD:238011 | |||
EGF | 466..495 | CDD:278437 | |||
EGF | 605..633 | CDD:278437 | |||
EGF_CA | 716..750 | CDD:238011 | 13/33 (39%) | ||
EGF_CA | 753..789 | CDD:238011 | 14/36 (39%) | ||
EGF_CA | 792..828 | CDD:238011 | 19/35 (54%) | ||
EGF_CA | 830..865 | CDD:238011 | 17/34 (50%) | ||
EGF_CA | 868..905 | CDD:238011 | 14/36 (39%) | ||
EGF_CA | 907..943 | CDD:238011 | 16/35 (46%) | ||
EGF_CA | 1009..1045 | CDD:238011 | 13/35 (37%) | ||
EGF_CA | 1047..1082 | CDD:238011 | 5/34 (15%) | ||
Laminin_G_1 | 1155..1290 | CDD:278483 | 40/144 (28%) | ||
EGF | 1316..1346 | CDD:278437 | 12/29 (41%) | ||
Laminin_G_1 | 1388..1550 | CDD:278483 | 38/169 (22%) | ||
EGF_CA | <1593..1622 | CDD:238011 | 10/28 (36%) | ||
Laminin_G_2 | 1692..1828 | CDD:280389 | 33/153 (22%) | ||
EGF_CA | 1901..1937 | CDD:238011 | 14/35 (40%) | ||
EGF_CA | 1939..1974 | CDD:238011 | 10/34 (29%) | ||
EGF_CA | 2057..2094 | CDD:238011 | 20/36 (56%) | ||
EGF_CA | 2096..2133 | CDD:238011 | 2/36 (6%) | ||
EGF_CA | 2137..2175 | CDD:238011 | 0/37 (0%) | ||
Crb1 | NP_001100652.1 | EGF_CA | 73..108 | CDD:238011 | 8/34 (24%) |
EGF | 115..145 | CDD:278437 | 11/30 (37%) | ||
EGF_CA | 149..184 | CDD:238011 | 14/36 (39%) | ||
EGF_CA | 188..223 | CDD:238011 | 19/34 (56%) | ||
EGF_CA | 226..261 | CDD:238011 | 17/34 (50%) | ||
EGF_CA | 263..300 | CDD:238011 | 14/36 (39%) | ||
EGF_CA | <310..338 | CDD:238011 | 13/27 (48%) | ||
EGF_CA | 340..396 | CDD:238011 | 29/61 (48%) | ||
EGF_CA | 398..>425 | CDD:214542 | 12/26 (46%) | ||
Laminin_G_2 | 515..650 | CDD:280389 | 40/139 (29%) | ||
EGF_CA | 677..708 | CDD:238011 | 12/30 (40%) | ||
Laminin_G_2 | 744..861 | CDD:280389 | 38/166 (23%) | ||
EGF | 892..921 | CDD:278437 | 10/28 (36%) | ||
LamG | 955..1103 | CDD:238058 | 40/190 (21%) | ||
EGF_CA | <1147..1176 | CDD:238011 | 10/28 (36%) | ||
EGF_CA | 1178..1213 | CDD:238011 | 14/35 (40%) | ||
EGF_CA | 1298..1334 | CDD:238011 | 20/36 (56%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 1 | 1.000 | 74 | 1.000 | Domainoid score | I8987 |
eggNOG | 1 | 0.900 | - | - | E33208_3BAFT | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 1 | 1.050 | 707 | 1.000 | Inparanoid score | I626 |
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D111153at2759 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0003041 | |
OrthoInspector | 1 | 1.000 | - | - | otm44798 | |
orthoMCL | 1 | 0.900 | - | - | OOG6_100271 | |
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 1 | 1.000 | - | - | X4671 | |
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
10 | 9.770 |