DRSC/TRiP Functional Genomics Resources

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Protein Alignment crb and fbln1

DIOPT Version :9

Sequence 1:NP_001247284.1 Gene:crb / 42896 FlyBaseID:FBgn0259685 Length:2253 Species:Drosophila melanogaster
Sequence 2:NP_571117.2 Gene:fbln1 / 30240 ZFINID:ZDB-GENE-990415-73 Length:681 Species:Danio rerio


Alignment Length:738 Identity:187/738 - (25%)
Similarity:273/738 - (36%) Gaps:266/738 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   685 CE-------KAENCSPLN-CQEPMVC--VQNQCLCP---ENKVC--------------------N 716
            ||       ::::||.|. ..|...|  ||.|| |.   |:.:|                    :
Zfish    30 CEDGKKRGLESQDCSSLPLISESTTCRVVQEQC-CSAVLEDSICTSGINMAKDQSSCDALLSGSS 93

  Fly   717 QCATQPCQNGGEC---------------VDLPNGDYECKCTRGWTGRTCGNDVDECTLHPKICGN 766
            .|.|:..:...||               :.|| ..|:|    |...|:|  .||:...|......
Zfish    94 TCETKTTKMCCECCLLGRALQDQGLSCELSLP-VVYQC----GQVSRSC--CVDKQPAHGVQPSK 151

  Fly   767 GICKNEKGSYK------------CYCTPGF----TGVHCDSDVDECLSFP--CLNGATCHNKINA 813
            |..:|.:...|            |.|..||    .|.||: |::|||..|  |:.|..|.|.:.:
Zfish   152 GDAQNTEDQCKAAGCAQRCLNGTCSCLDGFKLKTDGKHCE-DINECLLGPHHCVTGERCINTLGS 215

  Fly   814 YEC----VCQPGYE---GENCEVDIDEC--GSNPCSNGSTCIDRINNFTCNCIPGM---TGRICD 866
            |.|    .|..|||   ...|: |||||  |::.|:....|.:...:|.|.  |.|   .|.|.|
Zfish   216 YRCQREISCGTGYELTDNNKCK-DIDECDLGTHNCAAEMECQNTAGSFRCR--PRMQCAAGFIQD 277

  Fly   867 -----IDIDDCVG--DPCLNGGQCIDQLGGFRCD-----CSGTGY----EGENCELNIDECL--S 913
                 |||::||.  .||..|..|.:.:|.|.|.     | |.||    ||..| ::||||.  .
Zfish   278 ALGSCIDINECVSVTGPCPGGQMCFNTVGSFICQRHSVTC-GRGYHLNAEGTRC-VDIDECAGPD 340

  Fly   914 NPCTNGAKCLDRVKDYFCDCHNGY----KGKNCEQDINECESNP---CQYNGNCLERSNITLYQM 971
            |.| :|..|::.|..|.|:|..|:    ..::|| |||||.:.|   |.:  .|           
Zfish   341 NSC-DGHGCINLVGSYRCECRTGFIFNSISRSCE-DINECRNYPGRLCAH--KC----------- 390

  Fly   972 SRITDLPKVFSQPFSFENASG-YECVCVPGI----IGKNCEININECDSNPCSKHGNCNDGIGTY 1031
                            ||..| |:|.|..|.    .|:||: ::|||:|:|||:  .|.:..|:|
Zfish   391 ----------------ENILGSYKCSCTAGFKLADDGRNCD-DVNECESSPCSQ--ECANVYGSY 436

  Fly  1032 TCECEPGF-----EGTHCEINIDECD--------RYNPCQRGTCYDQIDDYDCDCDAN-----YG 1078
            .|.|..|:     :|..|| :||||.        .|.      |::....:.|.|.|:     ..
Zfish   437 QCYCRRGYQLSDADGITCE-DIDECALPTGGHICSYR------CHNTPGSFHCTCPASGYTLAAN 494

  Fly  1079 GKNCSVLLKGCDQNPCLNGGACLPYLINEVTHLYNC----TCENGFQGDKCEKTTTLSMVATSLI 1139
            |::|.      |.:.||.|           ||  :|    :|.|...|.:|     ||       
Zfish   495 GRSCQ------DIDECLTG-----------TH--SCSESESCFNIQGGFRC-----LS------- 528

  Fly  1140 SVTTEREEGYDINLQFRTTLPNGVLAFGTTGEKNEPVSYILELINGRLNLHSSLLNKWEGVFIGS 1204
                     :|....:|.:        |.|..:.:....|..:.:.:.|..|.:||.        
Zfish   529 ---------FDCPANYRRS--------GDTRPRVDRADIIRCVKSCQHNDISCVLNP-------- 568

  Fly  1205 KLNDSNWHKVFVAINTSHLVLSA-------NDEQAIF---PVGSYETANNSQPSFPRTYLGGTIP 1259
                        .::|||..:|.       ..|:.:|   |..|: ..:...|......|.|.|.
Zfish   569 ------------ILSTSHTAISLPTFREFNKPEEIVFLRSPTPSH-LPHMDSPEIVYDILEGNIQ 620

  Fly  1260 NLKSYLRHLTHQPSAFVGCMQDI 1282
            |....::.|.|  ...||.::.:
Zfish   621 NSFDIIKRLDH--GMIVGVVRQV 641

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
crbNP_001247284.1 LamG 91..228 CDD:238058
EGF_CA 386..423 CDD:238011
EGF_CA 425..460 CDD:238011
EGF 466..495 CDD:278437
EGF 605..633 CDD:278437
EGF_CA 716..750 CDD:238011 10/48 (21%)
EGF_CA 753..789 CDD:238011 11/51 (22%)
EGF_CA 792..828 CDD:238011 15/44 (34%)
EGF_CA 830..865 CDD:238011 13/39 (33%)
EGF_CA 868..905 CDD:238011 17/47 (36%)
EGF_CA 907..943 CDD:238011 13/41 (32%)
EGF_CA 1009..1045 CDD:238011 14/40 (35%)
EGF_CA 1047..1082 CDD:238011 10/47 (21%)
Laminin_G_1 1155..1290 CDD:278483 25/138 (18%)
EGF 1316..1346 CDD:278437
Laminin_G_1 1388..1550 CDD:278483
EGF_CA <1593..1622 CDD:238011
Laminin_G_2 1692..1828 CDD:280389
EGF_CA 1901..1937 CDD:238011
EGF_CA 1939..1974 CDD:238011
EGF_CA 2057..2094 CDD:238011
EGF_CA 2096..2133 CDD:238011
EGF_CA 2137..2175 CDD:238011
fbln1NP_571117.2 ANATO 19..72 CDD:294031 13/42 (31%)
ANATO 99..>139 CDD:294031 9/46 (20%)
cEGF 174..195 CDD:289433 8/21 (38%)
EGF_CA 192..235 CDD:304395 15/42 (36%)
EGF_CA 238..>265 CDD:284955 9/26 (35%)
EGF_CA 284..331 CDD:214542 18/48 (38%)
EGF_CA 332..>363 CDD:214542 12/31 (39%)
cEGF 354..377 CDD:289433 8/23 (35%)
cEGF 396..419 CDD:289433 7/23 (30%)
cEGF 435..459 CDD:289433 8/24 (33%)
cEGF 479..503 CDD:289433 6/29 (21%)
EGF_CA 500..540 CDD:284955 15/81 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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