DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment crb and Pros1

DIOPT Version :9

Sequence 1:NP_001247284.1 Gene:crb / 42896 FlyBaseID:FBgn0259685 Length:2253 Species:Drosophila melanogaster
Sequence 2:NP_035303.1 Gene:Pros1 / 19128 MGIID:1095733 Length:675 Species:Mus musculus


Alignment Length:708 Identity:156/708 - (22%)
Similarity:245/708 - (34%) Gaps:239/708 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   710 PENKVC-----NQCATQPCQNGG--ECVDLPNGDYECKCTRGWTGRTCGNDVDECTLHPKICG-- 765
            |:.:.|     :||...||...|  .|.| ....:.|.|..||.|..|..||:||.....:.|  
Mouse   108 PDLRSCVKAISDQCDPIPCNEDGYLACQD-GQAAFTCFCKPGWQGDRCQYDVNECKDPSNVNGGC 171

  Fly   766 NGICKNEKGSYKCYCTPGFTGV----HCDSDVDECLSFPCLNG-ATCHNKINAYECVCQPGY--- 822
            :.||.|..|||.|.|..||..:    .| .|:|||...|.:.| |.|.|....:||.|..||   
Mouse   172 SQICDNTPGSYHCSCKRGFAMLPNKKDC-KDLDECALKPSVCGTAVCKNIPGDFECECPDGYRYD 235

  Fly   823 -EGENCEVDIDECGSNPCSNGSTCIDRINNFTCNCIPGMTGRICDIDIDDCVGDPCLNGGQCIDQ 886
             ..::|: |:|||..|.|:.                                        .|::.
Mouse   236 PSSKSCK-DVDECSENMCAQ----------------------------------------LCVNF 259

  Fly   887 LGGFRCDCSGTGYEGENCELNIDECLSNPCTNGAKCLDRVKDYFCDCHNGYKGKNCEQDINECES 951
            .||:.|                                     :||   |.||....||...||.
Mouse   260 PGGYSC-------------------------------------YCD---GKKGFKLAQDQKSCEG 284

  Fly   952 NPCQYNGNCL---------------ERSNITLYQMSRITDLPKVFSQPFSFENASGYECVCVPGI 1001
            .|.     ||               :.:.:.||...|:.|:.: ||..|.|..   |:.   .||
Mouse   285 IPV-----CLSLDLDKNYELLYLAEQFAGVVLYLKFRLPDITR-FSAEFDFRT---YDS---EGI 337

  Fly  1002 I------------------GKNCEININECDSNPCSKHGN-CNDGIGTYTCECEPGFEGTHCEIN 1047
            |                  || .|:......|...:..|| .|:||...              ::
Mouse   338 ILYAESLDHSNWLLIALRDGK-IEVQFKNEFSTQITTGGNVINNGIWNM--------------VS 387

  Fly  1048 IDECDR-----------YNPCQRGTCYDQIDDYDCDCDANYGG---KNCSVLLKGCDQNPCLNG- 1097
            ::|.|.           .|..:.|:.:...|.: .|....:.|   |..|.|:|..  ||.|:| 
Mouse   388 VEELDDSVSIKIAKEAVMNINKLGSLFKPTDGF-LDTKIYFAGLPRKVESALIKPI--NPRLDGC 449

  Fly  1098 ---------GACLPYLINEVTHLYNC--TCENG--FQGDKCEKTTTLSMVATSLISVTTEREEGY 1149
                     ||.....|.|.....:|  ..|.|  :.|      :.::..:....:||  ..||:
Mouse   450 IRGWNLMKQGALGAKEIIEGKQNKHCFLNVEKGSYYPG------SGIAQFSIDYNNVT--NAEGW 506

  Fly  1150 DIN--LQFRTTLPNGVLAFGTTGEKNEPVSYILELINGR--------LNLHSSLLNKWEGVFIGS 1204
            .:|  |..|.:...||:....:|   ..|.:.|.|::.|        :.:.:|::.:.|.|.:.|
Mouse   507 QMNVTLNIRPSTGTGVMLALVSG---GTVPFALSLVDSRSGTSQDIVVFVENSVVARLEAVSLCS 568

  Fly  1205 ------KLN-DSNWHKVFVAINTSHLVLSANDEQAIFPVGSYETANNSQPSFPRTYLGGTIPNLK 1262
                  |.| :.|..:::..:...  |:.:.|.|....|     .:.:......||||| ||::.
Mouse   569 DQQSQLKCNVNRNGLELWTPLRKD--VIYSKDLQRQLAV-----LDKAMKRTVATYLGG-IPDIS 625

  Fly  1263 SYLRHLTHQPSAFVGCMQDIMVNGKWIFPDEQDANISYTKLENVQS-GCPRTEQCKPN 1319
            .   ..|...:.:.||| ::.:||..:..||     :.:|.::::: .||...:.:.|
Mouse   626 F---SATPVNAFYSGCM-EVNINGVQLDLDE-----AISKHKDIRAHSCPSVRKIQKN 674

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
crbNP_001247284.1 LamG 91..228 CDD:238058
EGF_CA 386..423 CDD:238011
EGF_CA 425..460 CDD:238011
EGF 466..495 CDD:278437
EGF 605..633 CDD:278437
EGF_CA 716..750 CDD:238011 12/35 (34%)
EGF_CA 753..789 CDD:238011 15/41 (37%)
EGF_CA 792..828 CDD:238011 14/40 (35%)
EGF_CA 830..865 CDD:238011 6/34 (18%)
EGF_CA 868..905 CDD:238011 4/36 (11%)
EGF_CA 907..943 CDD:238011 5/35 (14%)
EGF_CA 1009..1045 CDD:238011 6/36 (17%)
EGF_CA 1047..1082 CDD:238011 8/48 (17%)
Laminin_G_1 1155..1290 CDD:278483 32/149 (21%)
EGF 1316..1346 CDD:278437 1/4 (25%)
Laminin_G_1 1388..1550 CDD:278483
EGF_CA <1593..1622 CDD:238011
Laminin_G_2 1692..1828 CDD:280389
EGF_CA 1901..1937 CDD:238011
EGF_CA 1939..1974 CDD:238011
EGF_CA 2057..2094 CDD:238011
EGF_CA 2096..2133 CDD:238011
EGF_CA 2137..2175 CDD:238011
Pros1NP_035303.1 GLA 23..85 CDD:214503
Thrombin-sensitive 88..116 2/7 (29%)
Plasmod_Pvs28 134..287 CDD:283826 58/235 (25%)
FXa_inhibition 165..199 CDD:291342 11/33 (33%)
EGF_CA 201..241 CDD:284955 14/39 (36%)
FXa_inhibition 247..282 CDD:291342 14/114 (12%)
Laminin_G_1 329..459 CDD:278483 29/153 (19%)
LamG 514..646 CDD:304605 31/146 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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