DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment crb and egas-2

DIOPT Version :9

Sequence 1:NP_001247284.1 Gene:crb / 42896 FlyBaseID:FBgn0259685 Length:2253 Species:Drosophila melanogaster
Sequence 2:NP_507640.2 Gene:egas-2 / 190561 WormBaseID:WBGene00013487 Length:919 Species:Caenorhabditis elegans


Alignment Length:1172 Identity:247/1172 - (21%)
Similarity:367/1172 - (31%) Gaps:451/1172 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly   306 SPCAKNPCENGGSCLE---------NSRGDYQCFCDPNHSGQHCETEVNIHPLCQTNPCLNNGAC 361
            ||...:.|.|.|.|.:         |....|:..|.|.:                          
 Worm    25 SPNPPHGCPNFGLCTDVTTTLVSSTNVSTTYEYGCAPEN-------------------------- 63

  Fly   362 VVIGGSGALTCECPKGYAGAR--CEVDTDECASQPCQNNGS-----CIDRINGFSCDCSGTGYTG 419
                      |.|..|.....  |:...|:|...||   |.     |..:|...:|.|. .||||
 Worm    64 ----------CYCVDGTTNGTEPCDTIVDQCGDDPC---GEPEYFLCTSKIESHTCACQ-AGYTG 114

  Fly   420 AFCQTNV-DECDKNPCLNGGRCFDTYG----WYTCQCLDGWGGEICDRPMTCQTQQCLNGGTC-- 477
            |.|.:.: ..|..:||.:|..|..:..    .|:|.|.|...|..|:....|.:..|.|.|.|  
 Worm   115 ADCTSELGTACATSPCRSGATCVSSNSSATTEYSCICTDQQFGTHCEYDNLCASNPCQNSGNCTM 179

  Fly   478 -LDKPIGFQCLCPPEYTGELCQIAPSCAQQCPIDSECVGGKCVCKPGSSGPIGHCLPTTTTPTPE 541
             |:.. .:.|.|.|::.|..|::|.:.:.. |:...|.       ...:|.||.|          
 Worm   180 VLENS-NYLCTCSPDWQGRRCEVADAVSTP-PVQDGCY-------LYDTGSIGAC---------- 225

  Fly   542 QEPTTTPRTTPNPNPAIPNTLTTTTKIPPITTSRTLVGTTTGSRRPPQQPLQSPTQRSASLNACP 606
                                   |||.                                      
 Worm   226 -----------------------TTKF-------------------------------------- 229

  Fly   607 QENCLNGGTCLGY---------SGNYSCICASGYTGYNCQTSTGDGASALALTPINCNATNGKCL 662
            .||.|....|..|         :.||..:|     |..|..|.         .|: ||.      
 Worm   230 TENSLTSSKCNNYALEQSTDTVTMNYLTLC-----GAWCMVSE---------APL-CNT------ 273

  Fly   663 NGGTCSMNGTHCYCAVGYSGDRCEKAENCSPLNCQEPMVCVQNQCLCPENKVCNQCATQPCQNGG 727
               :..|:|.   |.....||   .||.|..||         ::|:.                  
 Worm   274 ---SWYMDGD---CKKSCGGD---SAEYCGRLN---------SRCIV------------------ 302

  Fly   728 ECVDLPNGDYECKCTRGWTGRTCGNDVDECTLHPKIC----GNGICKNEKGSYKCYCTPGFTGVH 788
                     ||        ..|...|.:.||.:..:|    |.|||                 ::
 Worm   303 ---------YE--------AGTSETDANACTDNSTLCNANLGQGIC-----------------IN 333

  Fly   789 CDSDVDECLSFPCLNGATCHNKINAYECVCQPGYEGENCEVDI-DECGSNPCSNGSTCI--DRIN 850
            ..|||                 .|.|:|:|.|.:...:||..: ..|..:||.|| .|:  ::.|
 Worm   334 LSSDV-----------------TNGYQCICGPLWTDTDCETPVASACTPSPCWNG-ICVLNEQYN 380

  Fly   851 NFTCNCIPGMTGRICDIDIDDCVGDPCLNGGQCID-QLGGFRCDCSGTGYEGENCELNIDEC-LS 913
            .:||.|..|..|.:|... |.|....||.||.|.: ..||:.|.|. :.|.|.||| .|:.| .:
 Worm   381 TYTCACDDGYFGDLCQYP-DVCTSSTCLYGGTCTETSSGGYTCSCL-SQYFGTNCE-EINRCNYA 442

  Fly   914 NPCTNGAKCLDRV----KDYFCDCHNGYKGKNCEQDINECESNPCQYNGNCLERSNITLYQMSRI 974
            :||.|| .|...|    .:|.|.|.:|:.|:||:..|:.|..|||.||..|              
 Worm   443 DPCVNG-DCQTTVDGITTNYTCTCDSGWTGENCDTMIDYCIPNPCSYNSTC-------------- 492

  Fly   975 TDLPKVFSQPFSFENASGYECVCVPGIIGKNCEININEC----DS------NPCSKH---GNCND 1026
                    .|:    ..|:.|.|:.|:.|.||...|:.|    ||      :||:..   .||..
 Worm   493 --------SPY----FKGFNCTCITGLTGANCSTIIDLCVPYKDSTGKWIKSPCNSKDDLANCTI 545

  Fly  1027 GIGTYTCECEPGFEGTHCEINIDECDRYNPCQRGTCYDQIDDYDCDCDANYGGKNCSVLLKGCDQ 1091
            .|..:.|.|...:..|.|::|:...|...     |.|..:|            .....||....|
 Worm   546 EINGFNCSCSDKWTDTLCDLNVLIKDVLL-----TIYGHVD------------LTMITLLNDLMQ 593

  Fly  1092 NPCLNGGACLPYLINEVTHLYNCTCENGFQGDKCEKTTTLSMVATSLISVTTEREEGYDINLQF- 1155
            ||                                .:...:....|.|:|.:...:..:|:...| 
 Worm   594 NP--------------------------------SQIKDMVPFITGLLSDSERSDLSWDVGDLFN 626

  Fly  1156 -------RTTLPNGVLAFG--------TTGEKNEPVSYILELINGRLNLHSSLLNKWEGVFIGSK 1205
                   |..|.|.:..:.        |...:::..:|::.    |...|..:     ..|:.::
 Worm   627 WIAFEDQRLDLENDIYKWNDVVLGNCFTFNHQDQNFTYLMR----RPGRHGGI-----QAFMKTR 682

  Fly  1206 LND-SNWHKVFVAINTSHLVLSANDEQAIFPVGSYETANNSQPSFPRTY---------LGGTI-- 1258
            .:: :.|:.     ....||...|.|..:|   |.....|:||:...|.         |||..  
 Worm   683 QDEYAPWYD-----TAGMLVFIHNREDYVF---SESVRYNAQPNAQSTINIFMTRYTRLGGRYGK 739

  Fly  1259 -----PNLKSYLRHLTHQPSAFV--GCM----QDIMVNGKWIFPDEQDANI---SYTKLENVQSG 1309
                 ..:|:|     :.|.|:.  ||:    ||.|         :|:...   .|.|..|..| 
 Worm   740 CVKKPSEVKNY-----YYPGAYTTDGCLRTCYQDRM---------QQECQCMDPRYPKAPNATS- 789

  Fly  1310 CPRTEQ-CKPNPCHSNGECTDLWHTFACHCPRPFFGHTCQHNMTAATFGHENTTHSAVIVE-TTD 1372
            |..:|: |......:.|: ...|.  :|.||.|     |.:...:.|:...|..:..:..| ::|
 Worm   790 CQLSERSCVTEASDAAGD-PSTWS--SCVCPLP-----CSNQEYSVTWSKANFVNMPITCEKSSD 846

  Fly  1373 VA 1374
            ||
 Worm   847 VA 848

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
crbNP_001247284.1 LamG 91..228 CDD:238058
EGF_CA 386..423 CDD:238011 14/41 (34%)
EGF_CA 425..460 CDD:238011 10/39 (26%)
EGF 466..495 CDD:278437 9/31 (29%)
EGF 605..633 CDD:278437 8/36 (22%)
EGF_CA 716..750 CDD:238011 2/33 (6%)
EGF_CA 753..789 CDD:238011 8/39 (21%)
EGF_CA 792..828 CDD:238011 7/35 (20%)
EGF_CA 830..865 CDD:238011 12/37 (32%)
EGF_CA 868..905 CDD:238011 14/37 (38%)
EGF_CA 907..943 CDD:238011 14/40 (35%)
EGF_CA 1009..1045 CDD:238011 12/48 (25%)
EGF_CA 1047..1082 CDD:238011 5/34 (15%)
Laminin_G_1 1155..1290 CDD:278483 32/173 (18%)
EGF 1316..1346 CDD:278437 7/29 (24%)
Laminin_G_1 1388..1550 CDD:278483
EGF_CA <1593..1622 CDD:238011
Laminin_G_2 1692..1828 CDD:280389
EGF_CA 1901..1937 CDD:238011
EGF_CA 1939..1974 CDD:238011
EGF_CA 2057..2094 CDD:238011
EGF_CA 2096..2133 CDD:238011
EGF_CA 2137..2175 CDD:238011
egas-2NP_507640.2 ASC <650..908 CDD:279230 49/239 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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