DRSC/TRiP Functional Genomics Resources

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Protein Alignment crb and slt-1

DIOPT Version :9

Sequence 1:NP_001247284.1 Gene:crb / 42896 FlyBaseID:FBgn0259685 Length:2253 Species:Drosophila melanogaster
Sequence 2:NP_510437.2 Gene:slt-1 / 181562 WormBaseID:WBGene00004854 Length:1410 Species:Caenorhabditis elegans


Alignment Length:1541 Identity:324/1541 - (21%)
Similarity:487/1541 - (31%) Gaps:554/1541 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   117 SCRGGEILAQQYNKNSIVISVLNDFLQISLAGPAVH--GPN---NRLDVKLPYQLLDNR------ 170
            ||.|.::.....|       :.||.:::.|....:.  |||   :.:::| ..||:||:      
 Worm    29 SCVGQQLTEVPQN-------IPNDTIRLDLQDNEITKIGPNDFSSLMNLK-ALQLMDNQIVTIHN 85

  Fly   171 --WHTLQFKYEYGNLYLHVDRAASIFANSTYNSQFLTNQDIGYKDAILILGNSFSGCLLDGPGLQ 233
              :.:|.|..:   |.|..:|...:..|...|:..||:.|:...|..::     |...|.||...
 Worm    86 QSFSSLVFLQK---LRLSRNRIRHLPDNVFQNNLKLTHLDLSENDITVV-----SDAQLQGPEFL 142

  Fly   234 FVNNSTVQNVVFGHCPLTPGPCSDHDLFT-------------RL-----PDNF------CLNDPC 274
            .|.|.. :|.:|         |.::::.:             ||     |.|.      ..|:| 
 Worm   143 EVLNLD-KNHIF---------CLENNVISSWVSLEVLTLNGNRLTTFEEPSNARFRQLDLFNNP- 196

  Fly   275 MGHGTCSSSPEGYECRCTARYSGKNCQK---DNGSPCAKNPCENGGSCLENSRGDYQCFCDPNHS 336
                        :.|.|..|:..|..:|   .|.:.|| .|....||.:|..:..:.. |..|..
 Worm   197 ------------WNCDCRLRWMRKWLEKAEGQNKTVCA-TPLNLQGSSIEILQDKFMT-CSGNRK 247

  Fly   337 GQH---CETEVNIHPLCQTNPCLNNGACVVIGGSGAL---------TCEC--------------- 374
            .::   ||| ..|.||    ||...|..|....||..         |.|.               
 Worm   248 RRYKKTCET-AEICPL----PCTCTGTTVDCRDSGLTYVPTNLPPSTTEIRLEQNQISSIPSHSF 307

  Fly   375 --------------------PKGYAGARCEVDT--------DECASQPCQNNGS---CIDRINGF 408
                                ||.:.|.. .:.|        .:..|...:..||   .:...|..
 Worm   308 KNLKNLTRLDLSKNIITEIQPKAFLGLH-NLHTLVLYGNNITDLKSDTFEGLGSLQLLLLNANQL 371

  Fly   409 SCDCSGT-GYTGAFCQTNVDECD---------------------KNPCLNGGRCFDTYGWYTCQC 451
            :|...|| .:.......::.:.|                     |||.:             |.|
 Worm   372 TCIRRGTFDHVPKLSMLSLYDNDIKSISEVTFQNLTSLSTLHLAKNPLI-------------CDC 423

  Fly   452 LDGW------------GGEICDRPMTCQTQQCLNGGTCLDKPIGFQCLCPPEYT---GELCQIAP 501
            ...|            .|..|::|...:.::     .....|..|:|.....:.   .:.|.|..
 Worm   424 NLQWLAQINLQKNIETSGARCEQPKRLRKKK-----FATLPPNKFKCKGSESFVSMYADSCFIDS 483

  Fly   502 SCAQQCPIDSECVGGKCVCKPGSSGPIGHCLPTTTTPTPEQEPTTTPR------------TTPNP 554
            .|..||    :|.|....|.......|               ||:.||            :|.:.
 Worm   484 ICPTQC----DCYGTTVDCNKRGLNTI---------------PTSIPRFATQLLLSGNNISTVDL 529

  Fly   555 NPAI------------PNTLT------------------TTTKIPPITT---------------- 573
            |..|            .|.:|                  ...|:...::                
 Worm   530 NSNIHVLENLEVLDLSNNHITFINDKSFEKLSKLRELRLNDNKLHHFSSMVLDEQSNLEILDLSG 594

  Fly   574 ------SRTLVGTTTGSRR---------------PPQQPLQSPTQRSASLNACPQENCLNGGTCL 617
                  |.......|..|.               |....|:|.:..|..:..|.|         .
 Worm   595 NNIQCFSSIFFNKATRIREIKVIGNDLLCDCRILPLMSWLRSNSSHSIDIPPCQQ---------F 650

  Fly   618 GYSGNYS--CICASGYTGYNCQTSTGDGASALALTPINCNATNG--KCLNGGTCS------MNGT 672
            .||.|.|  ..||:    :..:|.:.|.    .|.|..|:..:.  :|.|....|      .:.|
 Worm   651 QYSDNESDKQRCAA----FPEETCSDDS----NLCPPKCSCLDRVVRCSNKNLTSFPSRIPFDTT 707

  Fly   673 HCYCAVGY--------------------SGDRCEKAEN--CSPLNCQEPMVCVQNQCLCPENKVC 715
            ..|....|                    |.:|....||  .|.|.....::...|:..|      
 Worm   708 ELYLDANYINEIPAHDLNRLYSLTKLDLSHNRLISLENNTFSNLTRLSTLIISYNKLRC------ 766

  Fly   716 NQCATQPCQ------------NGGECVDLPNGDYE----------------CKCTRGWTGRTCGN 752
                .||..            :|.:...||...:.                |.|...|..:...:
 Worm   767 ----LQPLAFNGLNALRILSLHGNDISFLPQSAFSNLTSITHIAVGSNSLYCDCNMAWFSKWIKS 827

  Fly   753 DVDECTL----HPKICGNGICKNEKGSYKCYCTPGFTGVHCDSDVDECLSFPCLNGATCHNKINA 813
            ...|..:    :|....|.:....: .|:      ||   |||.|...|:..|            
 Worm   828 KFIEAGIARCEYPNTVSNQLLLTAQ-PYQ------FT---CDSKVPTKLATKC------------ 870

  Fly   814 YECVCQPGYEGENCEVDIDECGSNPCSNGSTC-IDRINNFTCNCIPGMTGRICDIDIDDCVGDPC 877
                              |.|.::||.|.:.| ......:||||.||..|..|:..||.|.|.||
 Worm   871 ------------------DLCLNSPCKNNAICETTSSRKYTCNCTPGFYGVHCENQIDACYGSPC 917

  Fly   878 LNGGQC-IDQLGGFRCDCSGTGYEGENCELNIDECLSNPCTNGAKCLDRVKDYFCDCHNGYKGKN 941
            ||...| :.|.|.|.|.|: .|:||:.||.|||:|:::.|.||.||:|.:..|.|||...|:||:
 Worm   918 LNNATCKVAQAGRFNCYCN-KGFEGDYCEKNIDDCVNSKCENGGKCVDLINSYRCDCPMEYEGKH 981

  Fly   942 CEQDINEC--ESNPCQYNGNCLERSNITLYQMSRITDLPKVFSQPFSFENASGYECVCVPGIIGK 1004
            ||..:..|  :.|||:.||.|:                      |.:    ..|.|:|.||..|.
 Worm   982 CEDKLEYCTKKLNPCENNGKCI----------------------PIN----GSYSCMCSPGFTGN 1020

  Fly  1005 NCEININECDSNPCSKHGNCNDGIGTYTCECEPGFEGTHCEINIDECDRYNPCQRGTCYDQIDDY 1069
            |||.||::|.:..|...|:|.|||.:|.|.|.||:.|.:|||         |......|.:.|  
 Worm  1021 NCETNIDDCKNVECQNGGSCVDGILSYDCLCRPGYAGQYCEI---------PPMMDMEYQKTD-- 1074

  Fly  1070 DCDCDANYGGKNCSVLLKGCDQNPCLNGGACLPYLINEVTHLYNCTCENGFQGDKCEKTTTLSMV 1134
                              .|.|:.| ..|.|   :.::.:..:.|.|..||.|..|::..::...
 Worm  1075 ------------------ACQQSAC-GQGEC---VASQNSSDFTCKCHEGFSGPSCDRQMSVGFK 1117

  Fly  1135 ATSLISVTTEREEGYDINLQFRTTLPNGVLAFGTTGEKNEPVSYI-LELINGRLNLHSSLLNKWE 1198
            ................|.:..|||...|:|.:  .|:.:    :: .||.:||:.|         
 Worm  1118 NPGAYLALDPLASDGTITMTLRTTSKIGILLY--YGDDH----FVSAELYDGRVKL--------- 1167

  Fly  1199 GVFIGS----------KLNDSNWHKVFVAINTSH----LVLSANDEQAIFPVGSYETANNSQPSF 1249
            ..:||:          |:||...|:  ::|.||.    |.:..|      ||...|.:..|....
 Worm  1168 VYYIGNFPASHMYSSVKVNDGLPHR--ISIRTSERKCFLQIDKN------PVQIVENSGKSDQLI 1224

  Fly  1250 PR----TYLGGTIPNLKSY---LRHLTHQPSAFVGCMQDIMVNGKWIFPDEQDANISYTKLENV- 1306
            .:    .|:|| :|..||.   .|.......:..||:..|.:|       |...|:... |||| 
 Worm  1225 TKGKEMLYIGG-LPIEKSQDAKRRFHVKNSESLKGCISSITIN-------EVPINLQQA-LENVN 1280

  Fly  1307 -QSGCPRTEQ-CKPNPCHSNGECTDLWHT---FACHCPRPFFGHTC 1347
             :..|..|.. |....| .||:||:...:   :.|.|...|.|..|
 Worm  1281 TEQSCSATVNFCAGIDC-GNGKCTNNALSPKGYMCQCDSHFSGEHC 1325

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
crbNP_001247284.1 LamG 91..228 CDD:238058 27/123 (22%)
EGF_CA 386..423 CDD:238011 8/48 (17%)
EGF_CA 425..460 CDD:238011 8/67 (12%)
EGF 466..495 CDD:278437 3/31 (10%)
EGF 605..633 CDD:278437 8/29 (28%)
EGF_CA 716..750 CDD:238011 8/61 (13%)
EGF_CA 753..789 CDD:238011 6/39 (15%)
EGF_CA 792..828 CDD:238011 3/35 (9%)
EGF_CA 830..865 CDD:238011 13/35 (37%)
EGF_CA 868..905 CDD:238011 17/37 (46%)
EGF_CA 907..943 CDD:238011 17/35 (49%)
EGF_CA 1009..1045 CDD:238011 15/35 (43%)
EGF_CA 1047..1082 CDD:238011 3/34 (9%)
Laminin_G_1 1155..1290 CDD:278483 37/156 (24%)
EGF 1316..1346 CDD:278437 10/32 (31%)
Laminin_G_1 1388..1550 CDD:278483
EGF_CA <1593..1622 CDD:238011
Laminin_G_2 1692..1828 CDD:280389
EGF_CA 1901..1937 CDD:238011
EGF_CA 1939..1974 CDD:238011
EGF_CA 2057..2094 CDD:238011
EGF_CA 2096..2133 CDD:238011
EGF_CA 2137..2175 CDD:238011
slt-1NP_510437.2 LRRNT 17..47 CDD:214470 6/24 (25%)
leucine-rich repeat 26..45 CDD:275380 4/22 (18%)
LRR_RI <48..195 CDD:238064 33/165 (20%)
LRR_8 48..104 CDD:290566 13/59 (22%)
leucine-rich repeat 48..69 CDD:275380 4/20 (20%)
leucine-rich repeat 70..93 CDD:275380 6/23 (26%)
LRR_8 94..152 CDD:290566 16/66 (24%)
leucine-rich repeat 94..117 CDD:275380 5/25 (20%)
leucine-rich repeat 118..165 CDD:275380 13/61 (21%)
LRR_8 142..196 CDD:290566 10/63 (16%)
leucine-rich repeat 142..163 CDD:275380 5/30 (17%)
leucine-rich repeat 166..284 CDD:275380 32/137 (23%)
LRRCT 195..243 CDD:214507 13/62 (21%)
LRRNT 259..291 CDD:214470 10/35 (29%)
leucine-rich repeat 285..312 CDD:275380 2/26 (8%)
LRR_8 287..347 CDD:290566 6/60 (10%)
LRR_4 311..352 CDD:289563 4/41 (10%)
leucine-rich repeat 313..336 CDD:275380 3/23 (13%)
LRR_8 336..419 CDD:290566 11/82 (13%)
leucine-rich repeat 337..384 CDD:275380 8/46 (17%)
leucine-rich repeat 385..408 CDD:275380 1/22 (5%)
LRRCT 417..466 CDD:214507 10/66 (15%)
LRRNT 484..512 CDD:214470 9/46 (20%)
leucine-rich repeat 494..516 CDD:275380 6/36 (17%)
LRR_RI <514..635 CDD:238064 10/120 (8%)
leucine-rich repeat 517..538 CDD:275380 3/20 (15%)
LRR_8 538..597 CDD:290566 3/58 (5%)
leucine-rich repeat 539..562 CDD:275380 2/22 (9%)
leucine-rich repeat 563..586 CDD:275380 1/22 (5%)
leucine-rich repeat 587..610 CDD:275380 1/22 (5%)
leucine-rich repeat 611..675 CDD:275380 15/80 (19%)
leucine-rich repeat 676..729 CDD:275380 9/52 (17%)
LRRNT 677..708 CDD:214470 5/30 (17%)
LRR_8 729..788 CDD:290566 11/68 (16%)
LRR_4 729..771 CDD:289563 10/51 (20%)
leucine-rich repeat 730..753 CDD:275380 6/22 (27%)
leucine-rich repeat 754..777 CDD:275380 4/32 (13%)
leucine-rich repeat 778..799 CDD:275380 3/20 (15%)
EGF_CA 909..945 CDD:238011 17/36 (47%)
EGF_CA 947..983 CDD:238011 17/35 (49%)
EGF_CA <994..1023 CDD:238011 14/54 (26%)
EGF_CA 1025..1061 CDD:238011 15/35 (43%)
LamG 1133..1268 CDD:214598 38/165 (23%)
CT 1334..1405 CDD:214482
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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