DRSC/TRiP Functional Genomics Resources

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Protein Alignment crb and egas-1

DIOPT Version :9

Sequence 1:NP_001247284.1 Gene:crb / 42896 FlyBaseID:FBgn0259685 Length:2253 Species:Drosophila melanogaster
Sequence 2:NP_001359624.1 Gene:egas-1 / 180219 WormBaseID:WBGene00013486 Length:922 Species:Caenorhabditis elegans


Alignment Length:1284 Identity:259/1284 - (20%)
Similarity:384/1284 - (29%) Gaps:597/1284 - (46%)


- Green bases have known domain annotations that are detailed below.


  Fly   238 STVQNVVFGHCPLT-PGPCSDHDLFTRL-------------------PDN-FCL----------- 270
            ||.|.|.:....:. |..|:::.|.|.:                   ||| :||           
 Worm    15 STPQTVEYVPASINGPHGCANYGLCTDVTTTLVSSTNISVIYEYGCDPDNCYCLEGTTNGTEPCD 79

  Fly   271 -------NDPC--MGHGTCSSSPEGYECRCTARYSGKNCQKDNGSPCAKNPCENGGSC--LENSR 324
                   |:||  ..:..|:|..:.|.|.|...::|.:|:.:.||.||.:||.:|.:|  ::||.
 Worm    80 TIEDQCGNNPCGDPKYFLCTSKIKSYSCSCKPGFTGNDCKSELGSACATSPCRSGATCESVDNST 144

  Fly   325 GDYQCFCDPNHSGQHCETEVNIHPLCQTNPCLNNGACVVIGGSGALTCECPKGYAGARCEVDTDE 389
            ..|:|.|..|..|::||.:                                            :.
 Worm   145 AGYKCICKWNQMGENCEYD--------------------------------------------NF 165

  Fly   390 CASQPCQNNGSC---IDRINGFSCDCSGTGYTGAFCQTNVDECDKNPCLNGGRCFDTYGWYTCQC 451
            ||:..|||||:|   :|..|                                        :.|.|
 Worm   166 CANPQCQNNGNCSMVVDNAN----------------------------------------WICSC 190

  Fly   452 LDGWGGEICDRPMTCQTQQCLNGGTCLDKPIGFQCLCPPEYTGELCQIAPSCAQQCPIDSECVGG 516
            ..||.|..|:.|.|..|                    ||.:.|                      
 Worm   191 PPGWQGRRCETPDTVTT--------------------PPVWDG---------------------- 213

  Fly   517 KCVCKPGSSGPIGHCLPTTTTPTPEQEPTTTPRTTPNPNPAIPNTLTTTTKIPPITTSRTLVGTT 581
               |...:...||                                 .||||.             
 Worm   214 ---CYKYNFQSIG---------------------------------ATTTKF------------- 229

  Fly   582 TGSRRPPQQPLQSPTQRSASLNACPQENCLNGGTCLGY---------SGNYSCICASGYTGYNCQ 637
                                     .:|.|....|..|         :.||..:|          
 Worm   230 -------------------------SDNQLTVDKCNKYALQQSSDTVTMNYLTLC---------- 259

  Fly   638 TSTGDGASALALTPINCNATNGKCLNGGTCSMNGTHCYCAVGYSGDRCEKAENCSPLNCQEPMVC 702
                                      ||.|.::                                
 Worm   260 --------------------------GGFCMVS-------------------------------- 266

  Fly   703 VQNQCLCPENKVCNQCATQPCQNGGECVDLPNGDYECKCTRGWTGRTCGNDVDE-CTLHPKIC-- 764
                    |..:||              |..|.|.:||       :.||.:.:| |.:..|.|  
 Worm   267 --------EGPLCN--------------DTSNWDDDCK-------KKCGGNNNEFCGVLNKRCIV 302

  Fly   765 --------GNGICKNEKGSYKCYCTPGFTGVHCDSDVDECLSFPCLNGATCHNKINAYECVCQPG 821
                    ....|.|              ...|.:|:.:.|   |:|..:  :..:.|.|:|:|.
 Worm   303 YEAGTAEVDENACDN--------------STFCSADLGQGL---CINWQS--DFTDGYACICKPL 348

  Fly   822 YEGENCEVDIDE-CGSNPCSNGSTCI--DRINNFTCNCIPGMTGRICDIDIDDCVGDPCLNGGQC 883
            :.|.|||..:.| |..:||.|| ||:  |:.|.|||.|..|..|..|... |.|....||.||.|
 Worm   349 WTGRNCENPVPEACTPSPCLNG-TCVLNDQYNKFTCVCDDGFFGDKCQYS-DICTSATCLYGGTC 411

  Fly   884 ID-QLGGFRCDCSGTGYEGENCELNIDEC-LSNPCTNGAKCLDRV----KDYFCDCHNGYKGKNC 942
            .: ..|.::|||. ..|.|:|||: |:.| ...||.|| ||...:    .:|.|.|.:|:.|.||
 Worm   412 TELNNGDYKCDCL-LQYFGKNCEV-INRCDYGKPCNNG-KCASTIDGITTNYTCTCDDGWTGTNC 473

  Fly   943 EQDINECESNPCQYNGNCLERSNITLYQMSRITDLPKVFSQPFSFENASGYECVCVPGIIGKNCE 1007
            :..|:.|..|||.||..|                .||.          .||:|.|:.|:.|.||.
 Worm   474 DTMIDFCIPNPCSYNSTC----------------KPKF----------KGYDCTCITGLTGVNCS 512

  Fly  1008 ININEC----DS------NPCSKH---GNCNDGIGTYTCECEPGFEGTHCEINIDECDRYNPCQR 1059
            ..|:.|    ||      .||:..   .||..||.|.||.|...:..|.|::||           
 Worm   513 TIIDLCVPYKDSTGKWIKTPCNSKDDMANCTKGINTLTCSCGDKWTDTLCDLNI----------- 566

  Fly  1060 GTCYDQIDDYDCDCDANYGGKNCSV--LLKGCDQNPCLNGGACLPYLINEVTHLYNCTCENGFQG 1122
                 .|.|.   ..|.||..:.::  ||....|||. .....:|::...:|.            
 Worm   567 -----LIKDV---LMAIYGYVDLTMISLLNDLMQNPS-QIKDMVPFITGLLTD------------ 610

  Fly  1123 DKCEKTTTLSMVATSLISVTTEREEGYDINLQFRTTLPNGVLAFGTTGEKNEPVSYILELINGRL 1187
               .:.:.||..|..|.:.....::..|:|..                                 
 Worm   611 ---SERSDLSWDAGDLFNWIAFEDQRLDLNRD--------------------------------- 639

  Fly  1188 NLHSSLLNKWEGVFIGS-------------KLNDSNWH---KVFV--------------AINTSH 1222
                  ::||..|.:|:             :|..|..|   :.|:              |||   
 Worm   640 ------IHKWNDVVLGNCFTFNHRDRNFTYRLRSSGRHGGIQAFMKTRQDEYAPWYDTAAIN--- 695

  Fly  1223 LVLSANDEQAIFPVGSYETANNSQPSFPRTY---------LGGTI-------PNLKSYLRHLTHQ 1271
             |...|.:..:|   |.....|:||:...|.         |||..       ..:|:|     :.
 Worm   696 -VFIHNRDDYVF---SESVRYNAQPNAQSTMNIFMTRYTRLGGRYGKCVKKPSEVKNY-----YY 751

  Fly  1272 PSAFV--GCM----QDIMVNGKWIFPDEQDANI---SYTKLENVQSGCPRTEQ-CKPNPCHSNGE 1326
            |.|:.  ||:    ||.|         :|:.|.   .|.:.....:.|..:|: |......:.|:
 Worm   752 PGAYTTDGCLRTCYQDRM---------KQECNCMDPRYPQAPGNVTSCQLSERSCVTVASEAAGD 807

  Fly  1327 CTDLWHTFACHCPRPFFGHTCQHNMTAATFGHENTTHSAVIV-ETTDVA 1374
            .:..|.   |.||.|     |.:...:.|:...|..:..:|. :::||:
 Worm   808 PSKWWD---CVCPLP-----CSNQEYSVTWSKANFVNLPIICGKSSDVS 848

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
crbNP_001247284.1 LamG 91..228 CDD:238058
EGF_CA 386..423 CDD:238011 10/39 (26%)
EGF_CA 425..460 CDD:238011 5/34 (15%)
EGF 466..495 CDD:278437 3/28 (11%)
EGF 605..633 CDD:278437 7/36 (19%)
EGF_CA 716..750 CDD:238011 6/33 (18%)
EGF_CA 753..789 CDD:238011 6/46 (13%)
EGF_CA 792..828 CDD:238011 10/35 (29%)
EGF_CA 830..865 CDD:238011 16/37 (43%)
EGF_CA 868..905 CDD:238011 14/37 (38%)
EGF_CA 907..943 CDD:238011 14/40 (35%)
EGF_CA 1009..1045 CDD:238011 15/48 (31%)
EGF_CA 1047..1082 CDD:238011 7/34 (21%)
Laminin_G_1 1155..1290 CDD:278483 31/186 (17%)
EGF 1316..1346 CDD:278437 7/29 (24%)
Laminin_G_1 1388..1550 CDD:278483
EGF_CA <1593..1622 CDD:238011
Laminin_G_2 1692..1828 CDD:280389
EGF_CA 1901..1937 CDD:238011
EGF_CA 1939..1974 CDD:238011
EGF_CA 2057..2094 CDD:238011
EGF_CA 2096..2133 CDD:238011
EGF_CA 2137..2175 CDD:238011
egas-1NP_001359624.1 deg-1 <595..908 CDD:273309 57/338 (17%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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