Sequence 1: | NP_001247284.1 | Gene: | crb / 42896 | FlyBaseID: | FBgn0259685 | Length: | 2253 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_573502.2 | Gene: | Crb1 / 170788 | MGIID: | 2136343 | Length: | 1405 | Species: | Mus musculus |
Alignment Length: | 1743 | Identity: | 511/1743 - (29%) |
---|---|---|---|
Similarity: | 727/1743 - (41%) | Gaps: | 453/1743 - (25%) |
- Green bases have known domain annotations that are detailed below.
Fly 592 LQSPTQRSASLNACPQEN--CLN-----------------GGTCLGYS--------GNYSCICAS 629
Fly 630 GYTGYNCQTSTGDGASALALTPINCNATNGK-CLNGGTCSMNGTH--CYCAVGYSGDRCEKAENC 691
Fly 692 SPLNCQEPMVCVQNQCLCPENKVCNQCATQPCQNGGECVDLPNGDYECKCTRGWTGRTCGNDVDE 756
Fly 757 CTLHPKICGNGICKNEKGSYKCYCTPGFTGVHCDSDVDECLSFPCLNGATCHNKINAYECVCQPG 821
Fly 822 YEGENCEVDIDECGSNPCSNGSTCIDRINNFTCNCIPGMTGRICDIDIDDCVGDPCLNGGQCIDQ 886
Fly 887 LGGFRCDCSGTGYEGENCELNIDECLSNPCTNGAKCLDRVKDYFCDCHNGYKGKNCEQDINECES 951
Fly 952 NPCQYNGNCLERSNITLYQMSRITDLPKVFSQPFSFENASGYECVCVPGIIGKNCEININECDSN 1016
Fly 1017 PCSKHGNCNDGIGTYTCECEPGFEGTHCEINIDECDRYNPCQRGTCYDQIDDYDCDCDANYGGKN 1081
Fly 1082 CSVLLKGCDQNPCLNGGACLPYLINEVTHLYNCTCENGFQGDKCEKTTTLSMVATSLISVTTERE 1146
Fly 1147 EGY----DINLQFRTTLPNGVLAFGTTGEKNEPVSYILELINGRLNLHSSLLNKWEGVF-IGSKL 1206
Fly 1207 NDSNWHKVFVAI-NTSHLVL---SANDE---QAIFPVGSYETANNSQPSFPRTYLG----GTIPN 1260
Fly 1261 LKSYLRHLTHQPS--AFVGCMQDIMVNGKWIFPDEQDANISYTKLENVQSGCPRTEQCKPNPCHS 1323
Fly 1324 NGECTDLWHTFACHCPRPFFGHTCQHNMTAATFGHENTTHSAVIVETTDVARRAIRSILDISMFI 1388
Fly 1389 RTREPTGQVFYLGTDPRKAPTKNIGDSYVAAKLHGGELLVKMQFSGTPEAYTVGGQKLDNGYNHL 1453
Fly 1454 IEVVRNQTLVQVKLNGTEYFRK-------TLSTTGLLDAQVLYLGGPAPTRESLLGATTEPGIIP 1511
Fly 1512 VPGAGIPIEDTTVPKEADDSRDYFKGIIQDVKVSNGSLNLIVEMYSLNVTD--VQVNAKPLGAVT 1574
Fly 1575 IDRASVLPGEVSDDLCRKNPCLHNAECRNTWNDYTCKCPNGYKGKNCQEIEFCQHVTCPGQSLCQ 1639
Fly 1640 NLDDGYECVTNTTFTGQERSPLAFFYFQEQQSDDIVSEASPKQTLKPVIDIAFRTR-AGGTLLYI 1703
Fly 1704 DNVDGFFEIGVNGGRVTITWK----LSALHFGESARFEKENTDGEWSRIYLRAHNSKLEGGWKGW 1764
Fly 1765 ESMVDP---TPAFSTDI-DQAAFQ-SLIAT--------STQVYLGGMPESRQARGSTLSAQQGSQ 1816
Fly 1817 FKGCVGEARVGDLLLPYFSMAELYSRTNVSVQQKAQF-RLNATRPEEGCI---LCFQSDCKNDGF 1877
Fly 1878 CQSPSDEYACTCQPGFEGDDCGTDIDECLNTECLNNGTCINQVAAFFCQCQPGFEGQHCEQNIDE 1942
Fly 1943 CADQPCHNGGNCTDLIASYVCDCPEDYMGPQC--DVLKQMTCENEPCRNGSTCQNGFNASTGNNF 2005
Fly 2006 TCTCVPGFEGPLCDIPFCEITPCDNGGLCLTTGAVPMCKCSLGYTGRLCEQDINECESNPCQNGG 2070
Fly 2071 QCKDLVGRYECDCQGTGFEGIRCENDIDECNMEGDYCGGLGRCFNKPGSFQCICQKPYCGAYCNF 2135
Fly 2136 TDPCNATDLCSNGGRCVESCGAKPDYYCECPEGFAGKNCTAPITAKEDGPSTTDIAIIVIPVVVV 2200
Fly 2201 LLLIAGALLGTFLVMARNKRATRGTYSPSAQEYCNPRLEMDNVLKPPPEERLI 2253 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
crb | NP_001247284.1 | LamG | 91..228 | CDD:238058 | |
EGF_CA | 386..423 | CDD:238011 | |||
EGF_CA | 425..460 | CDD:238011 | |||
EGF | 466..495 | CDD:278437 | |||
EGF | 605..633 | CDD:278437 | 13/54 (24%) | ||
EGF_CA | 716..750 | CDD:238011 | 11/33 (33%) | ||
EGF_CA | 753..789 | CDD:238011 | 6/35 (17%) | ||
EGF_CA | 792..828 | CDD:238011 | 18/35 (51%) | ||
EGF_CA | 830..865 | CDD:238011 | 16/34 (47%) | ||
EGF_CA | 868..905 | CDD:238011 | 14/36 (39%) | ||
EGF_CA | 907..943 | CDD:238011 | 16/35 (46%) | ||
EGF_CA | 1009..1045 | CDD:238011 | 10/35 (29%) | ||
EGF_CA | 1047..1082 | CDD:238011 | 5/34 (15%) | ||
Laminin_G_1 | 1155..1290 | CDD:278483 | 47/148 (32%) | ||
EGF | 1316..1346 | CDD:278437 | 12/29 (41%) | ||
Laminin_G_1 | 1388..1550 | CDD:278483 | 40/168 (24%) | ||
EGF_CA | <1593..1622 | CDD:238011 | 10/28 (36%) | ||
Laminin_G_2 | 1692..1828 | CDD:280389 | 30/153 (20%) | ||
EGF_CA | 1901..1937 | CDD:238011 | 15/35 (43%) | ||
EGF_CA | 1939..1974 | CDD:238011 | 10/34 (29%) | ||
EGF_CA | 2057..2094 | CDD:238011 | 21/36 (58%) | ||
EGF_CA | 2096..2133 | CDD:238011 | 6/36 (17%) | ||
EGF_CA | 2137..2175 | CDD:238011 | 0/37 (0%) | ||
Crb1 | NP_573502.2 | EGF | 113..143 | CDD:394967 | 12/29 (41%) |
EGF_CA | 147..182 | CDD:238011 | 17/100 (17%) | ||
EGF_CA | 186..221 | CDD:238011 | 18/34 (53%) | ||
EGF_CA | 224..259 | CDD:238011 | 16/34 (47%) | ||
EGF_CA | 262..298 | CDD:238011 | 14/35 (40%) | ||
EGF_CA | <308..336 | CDD:238011 | 13/27 (48%) | ||
EGF_CA | 338..394 | CDD:238011 | 29/61 (48%) | ||
EGF_CA | 396..437 | CDD:214542 | 15/72 (21%) | ||
Laminin_G_2 | 513..648 | CDD:396680 | 47/143 (33%) | ||
EGF_CA | 675..706 | CDD:238011 | 12/30 (40%) | ||
Laminin_G_2 | 742..859 | CDD:396680 | 40/165 (24%) | ||
EGF_CA | 888..922 | CDD:238011 | 11/33 (33%) | ||
Laminin_G_2 | 979..1104 | CDD:396680 | 31/154 (20%) | ||
EGF_CA | 1140..1174 | CDD:238011 | 10/33 (30%) | ||
EGF_CA | 1176..1211 | CDD:238011 | 15/35 (43%) | ||
EGF_CA | 1213..1248 | CDD:238011 | 10/34 (29%) | ||
EGF_CA | 1296..1332 | CDD:238011 | 21/36 (58%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 1 | 1.000 | 70 | 1.000 | Domainoid score | I9549 |
eggNOG | 1 | 0.900 | - | - | E33208_3BAFT | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 1 | 0.950 | - | 0 | Normalized mean entropy | S6671 |
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 1 | 1.000 | - | - | FOG0003041 | |
OrthoInspector | 1 | 1.000 | - | - | otm42733 | |
orthoMCL | 1 | 0.900 | - | - | OOG6_100271 | |
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 1 | 1.030 | - | avgDist | Average_Evolutionary_Distance | R3765 |
SonicParanoid | 1 | 1.000 | - | - | X4671 | |
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
9 | 8.690 |