DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment crb and jag1b

DIOPT Version :9

Sequence 1:NP_001247284.1 Gene:crb / 42896 FlyBaseID:FBgn0259685 Length:2253 Species:Drosophila melanogaster
Sequence 2:NP_571938.2 Gene:jag1b / 140423 ZFINID:ZDB-GENE-011128-4 Length:1213 Species:Danio rerio


Alignment Length:1161 Identity:298/1161 - (25%)
Similarity:427/1161 - (36%) Gaps:382/1161 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   245 FGHCPLTPGPCSDHDLFTRL-----PD---NFCLNDPCMGHGTCSSSPEGYECRCTARYSGKNCQ 301
            |||.     .|..:...|.|     ||   ..|.......||:| ..|.|  |:|...:.|..|.
Zfish   204 FGHY-----TCDQNGNKTCLEGWTGPDCNTAICRQGCSTEHGSC-KQPGG--CKCLYGWQGPYCD 260

  Fly   302 KDNGSPCAKNPCENGGSCLENSRGDYQCFCDPNHSGQHCETEVNIHPLCQTN-PCLNNGACVVIG 365
            |     |..:|....|:|:|    .:||.||.|..||.|:.::|   .|.|: ||||.|.|... 
Zfish   261 K-----CIPHPGCVHGTCVE----PWQCLCDTNWGGQLCDKDLN---YCGTHQPCLNGGTCSNT- 312

  Fly   366 GSGALTCECPKGYAGARCEVDTDECASQPCQNNGSCIDRINGFSCDCSGTGYTGAFCQTNVDECD 430
            |.....|.|..||:|..||.....|.|.||.|.|:|.:...|:.|.|: .|::|..|:.|||:|.
Zfish   313 GPDKYQCSCEDGYSGVNCERAEHACLSNPCANGGTCKETSQGYECHCA-IGWSGTSCEINVDDCT 376

  Fly   431 KNPCLNGGRCFDTYGWYTCQCLDGWGGEICDRPMTCQTQQCLNGGTCLDKPIGFQCLCPPEYTGE 495
            .|                                     ||.:||||.|...||:|.|||.:||:
Zfish   377 PN-------------------------------------QCKHGGTCQDLVNGFKCACPPHWTGK 404

  Fly   496 LCQIAPSCAQQCPIDSECVGGKCVCKPGSSGPIGHCLPTTTTPTPEQEPTTTPRTTPNPNPAIPN 560
            .|||                                                             
Zfish   405 TCQI------------------------------------------------------------- 408

  Fly   561 TLTTTTKIPPITTSRTLVGTTTGSRRPPQQPLQSPTQRSASLNACPQENCLNGGTCLGYSGNYSC 625
                                                    ..|.|..:.|:|..:|....|.|.|
Zfish   409 ----------------------------------------DANECEDKPCVNAKSCHNLIGAYFC 433

  Fly   626 ICASGYTGYNCQTSTGDGASALALTPINCNATNGKCLNGGTCS--MNGTHCYCAVGYSGDRCEK- 687
            .|..|::|.||.              ||.|...|:|||||||.  :||..|.|..||:|::||| 
Zfish   434 ECLPGWSGQNCD--------------ININDCKGQCLNGGTCKDLVNGYRCLCPPGYTGEQCEKD 484

  Fly   688 AENCSPLNCQEPMVCVQN----QCLCP---ENKVC----NQCATQPCQNGGECVDLPNGDYECKC 741
            .:.|:...|.....|...    |||||   ..::|    :.|...|||||.:|.:|.: ||.|||
Zfish   485 VDECASSPCLNGGRCQDEVNGFQCLCPAGFSGQLCQLDIDYCKPNPCQNGAQCFNLAS-DYFCKC 548

  Fly   742 TRGWTGRTCGN-----------DVDECT--------------LHPKICG-NGICKNEK-GSYKCY 779
            ...:.|:.|.:           .:|.||              :...:|| :|.|:::. |.:.|.
Zfish   549 PDDYEGKNCSHLKDHCRTTSCQVIDSCTVAVASNSTPEGVRYISSNVCGPHGRCRSQAGGQFTCE 613

  Fly   780 CTPGFTGVHCDSDVDECLSFPCLNGATCHNKINAYECVCQPGYEGENCEVDIDECGSNPCSNGST 844
            |..||.|.:|..::::|.|.||.||.||.:|:|.|:|:|..|:||.:||::||:|..|||.|...
Zfish   614 CQEGFRGTYCHENINDCESNPCRNGGTCIDKVNVYQCICADGWEGVHCEINIDDCSLNPCLNKGA 678

  Fly   845 CIDRINNFTCNCIPGMTGRICDIDIDDCVGDPCLNGGQCIDQLGGFRCDCSGTGYEGENCEL-NI 908
            |.|.:|:|.|.|..|..|:.|......|....|.|||.|.|:...|:|.|| .|:||..|.: ..
Zfish   679 CQDLVNDFYCECRNGWKGKTCHSRDSQCDEATCNNGGTCHDEGDTFKCRCS-PGWEGATCNIAKN 742

  Fly   909 DECLSNPCTNGAKCLDRVKDYFCDCHNGYKGKNCEQDINECESNPCQYNGNCLERSNITLYQMSR 973
            ..||.|||.||..|:.....:.|.|..|::|..|.::.|:|..:||..:|.|::..|        
Zfish   743 SSCLPNPCENGGTCVVNGDSFNCVCKEGWEGSTCTENTNDCNPHPCYNSGTCVDGEN-------- 799

  Fly   974 ITDLPKVFSQPFSFENASGYECVCVPGIIGKNCEININECDSNPCSKHGNCNDGIGTYTCECEPG 1038
                              .|.|.|.||..|.:|.||||||.|:||:....|.|.|..|.|.|.||
Zfish   800 ------------------WYRCECAPGFAGPDCRININECQSSPCAFGSTCVDEINGYRCLCPPG 846

  Fly  1039 FEGTHCEINIDECDRYNPC-------QRGTCYDQIDDYDCD-CDANYGGKNCSVLLKG------- 1088
            ..|..|:..:.     .||       ..|..:::    ||: |....|..:|:::..|       
Zfish   847 RIGPDCQEVVG-----RPCIANGQVTADGAKWEE----DCNICQCQNGRIHCTMMWCGPKSCRTG 902

  Fly  1089 -------------------CDQNPCLNGGACLP-------------------------------- 1102
                               |...||.:.|.|.|                                
Zfish   903 KARGGCPASQSCVPIKEEQCFVKPCPSLGECWPSAPPPPSKCHASFSYQDDSCANITFTFNKENM 967

  Fly  1103 -------YLINEVTHLY---NCTCENGFQGDKCEKTTTLS---MVATSLISVTTEREEGYDINLQ 1154
                   ::.||:.|.|   |.:.|... ...||.:::.|   .::.|.....|:|....||.:|
Zfish   968 PQGLSVEHVCNELRHWYLLKNLSTEYAV-SISCEPSSSASNEIHISISTEEPRTDRSPIKDITVQ 1031

  Fly  1155 FRTTLP----NGVLAFGTTGEK-----NEPVSYILELING----------------------RLN 1188
            ....:.    |..:....||.:     :....|::.|::.                      :.|
Zfish  1032 IIDLVSKHNGNSTIIKAITGVRVHQIPSPKTDYLVPLLSSIFIVLWIFALASAFLWCIHRRRKQN 1096

  Fly  1189 LHSSLLNKWEGVFIGSKLNDSNWHKVFVAINTSHLVLSANDEQAIFPVGSYETANN 1244
            .||:...        |...|:..:.|...:|.....:..:....: |:..||..|:
Zfish  1097 THSNTAT--------SATEDNTTNNVREQLNQIKNPIEKHAAHGV-PIKDYEGKNS 1143

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
crbNP_001247284.1 LamG 91..228 CDD:238058
EGF_CA 386..423 CDD:238011 12/36 (33%)
EGF_CA 425..460 CDD:238011 5/34 (15%)
EGF 466..495 CDD:278437 14/28 (50%)
EGF 605..633 CDD:278437 9/27 (33%)
EGF_CA 716..750 CDD:238011 14/33 (42%)
EGF_CA 753..789 CDD:238011 13/51 (25%)
EGF_CA 792..828 CDD:238011 16/35 (46%)
EGF_CA 830..865 CDD:238011 15/34 (44%)
EGF_CA 868..905 CDD:238011 14/36 (39%)
EGF_CA 907..943 CDD:238011 12/35 (34%)
EGF_CA 1009..1045 CDD:238011 17/35 (49%)
EGF_CA 1047..1082 CDD:238011 7/42 (17%)
Laminin_G_1 1155..1290 CDD:278483 16/121 (13%)
EGF 1316..1346 CDD:278437
Laminin_G_1 1388..1550 CDD:278483
EGF_CA <1593..1622 CDD:238011
Laminin_G_2 1692..1828 CDD:280389
EGF_CA 1901..1937 CDD:238011
EGF_CA 1939..1974 CDD:238011
EGF_CA 2057..2094 CDD:238011
EGF_CA 2096..2133 CDD:238011
EGF_CA 2137..2175 CDD:238011
jag1bNP_571938.2 MNNL 29..102 CDD:284966
DSL 164..226 CDD:279722 7/26 (27%)
EGF_CA 293..331 CDD:238011 15/41 (37%)
EGF 337..365 CDD:278437 11/28 (39%)
EGF_CA 371..407 CDD:238011 20/72 (28%)
EGF_CA 409..444 CDD:238011 11/34 (32%)
EGF_CA 447..482 CDD:238011 17/34 (50%)
EGF_CA 484..520 CDD:238011 8/35 (23%)
EGF_CA 522..557 CDD:238011 14/35 (40%)
EGF_CA 626..662 CDD:238011 16/35 (46%)
EGF_CA 664..699 CDD:238011 15/34 (44%)
EGF_CA <711..737 CDD:238011 13/26 (50%)
EGF 745..775 CDD:278437 12/29 (41%)
EGF_CA 779..814 CDD:238011 13/60 (22%)
EGF_CA 817..853 CDD:238011 17/35 (49%)
VWC_out 860..927 CDD:214565 9/70 (13%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1181..1202
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 50 1.000 Domainoid score I11640
eggNOG 1 0.900 - - E33208_3BAFT
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.810

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