DRSC/TRiP Functional Genomics Resources

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Protein Alignment crb and jag1b

DIOPT Version :10

Sequence 1:NP_001247284.1 Gene:crb / 42896 FlyBaseID:FBgn0259685 Length:2253 Species:Drosophila melanogaster
Sequence 2:NP_571938.2 Gene:jag1b / 140423 ZFINID:ZDB-GENE-011128-4 Length:1213 Species:Danio rerio


Alignment Length:1161 Identity:298/1161 - (25%)
Similarity:427/1161 - (36%) Gaps:382/1161 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   245 FGHCPLTPGPCSDHDLFTRL-----PD---NFCLNDPCMGHGTCSSSPEGYECRCTARYSGKNCQ 301
            |||.     .|..:...|.|     ||   ..|.......||:| ..|.|  |:|...:.|..|.
Zfish   204 FGHY-----TCDQNGNKTCLEGWTGPDCNTAICRQGCSTEHGSC-KQPGG--CKCLYGWQGPYCD 260

  Fly   302 KDNGSPCAKNPCENGGSCLENSRGDYQCFCDPNHSGQHCETEVNIHPLCQTN-PCLNNGACVVIG 365
            |     |..:|....|:|:|    .:||.||.|..||.|:.::|   .|.|: ||||.|.|... 
Zfish   261 K-----CIPHPGCVHGTCVE----PWQCLCDTNWGGQLCDKDLN---YCGTHQPCLNGGTCSNT- 312

  Fly   366 GSGALTCECPKGYAGARCEVDTDECASQPCQNNGSCIDRINGFSCDCSGTGYTGAFCQTNVDECD 430
            |.....|.|..||:|..||.....|.|.||.|.|:|.:...|:.|.|: .|::|..|:.|||:|.
Zfish   313 GPDKYQCSCEDGYSGVNCERAEHACLSNPCANGGTCKETSQGYECHCA-IGWSGTSCEINVDDCT 376

  Fly   431 KNPCLNGGRCFDTYGWYTCQCLDGWGGEICDRPMTCQTQQCLNGGTCLDKPIGFQCLCPPEYTGE 495
            .|                                     ||.:||||.|...||:|.|||.:||:
Zfish   377 PN-------------------------------------QCKHGGTCQDLVNGFKCACPPHWTGK 404

  Fly   496 LCQIAPSCAQQCPIDSECVGGKCVCKPGSSGPIGHCLPTTTTPTPEQEPTTTPRTTPNPNPAIPN 560
            .|||                                                             
Zfish   405 TCQI------------------------------------------------------------- 408

  Fly   561 TLTTTTKIPPITTSRTLVGTTTGSRRPPQQPLQSPTQRSASLNACPQENCLNGGTCLGYSGNYSC 625
                                                    ..|.|..:.|:|..:|....|.|.|
Zfish   409 ----------------------------------------DANECEDKPCVNAKSCHNLIGAYFC 433

  Fly   626 ICASGYTGYNCQTSTGDGASALALTPINCNATNGKCLNGGTCS--MNGTHCYCAVGYSGDRCEK- 687
            .|..|::|.||.              ||.|...|:|||||||.  :||..|.|..||:|::||| 
Zfish   434 ECLPGWSGQNCD--------------ININDCKGQCLNGGTCKDLVNGYRCLCPPGYTGEQCEKD 484

  Fly   688 AENCSPLNCQEPMVCVQN----QCLCP---ENKVC----NQCATQPCQNGGECVDLPNGDYECKC 741
            .:.|:...|.....|...    |||||   ..::|    :.|...|||||.:|.:|.: ||.|||
Zfish   485 VDECASSPCLNGGRCQDEVNGFQCLCPAGFSGQLCQLDIDYCKPNPCQNGAQCFNLAS-DYFCKC 548

  Fly   742 TRGWTGRTCGN-----------DVDECT--------------LHPKICG-NGICKNEK-GSYKCY 779
            ...:.|:.|.:           .:|.||              :...:|| :|.|:::. |.:.|.
Zfish   549 PDDYEGKNCSHLKDHCRTTSCQVIDSCTVAVASNSTPEGVRYISSNVCGPHGRCRSQAGGQFTCE 613

  Fly   780 CTPGFTGVHCDSDVDECLSFPCLNGATCHNKINAYECVCQPGYEGENCEVDIDECGSNPCSNGST 844
            |..||.|.:|..::::|.|.||.||.||.:|:|.|:|:|..|:||.:||::||:|..|||.|...
Zfish   614 CQEGFRGTYCHENINDCESNPCRNGGTCIDKVNVYQCICADGWEGVHCEINIDDCSLNPCLNKGA 678

  Fly   845 CIDRINNFTCNCIPGMTGRICDIDIDDCVGDPCLNGGQCIDQLGGFRCDCSGTGYEGENCEL-NI 908
            |.|.:|:|.|.|..|..|:.|......|....|.|||.|.|:...|:|.|| .|:||..|.: ..
Zfish   679 CQDLVNDFYCECRNGWKGKTCHSRDSQCDEATCNNGGTCHDEGDTFKCRCS-PGWEGATCNIAKN 742

  Fly   909 DECLSNPCTNGAKCLDRVKDYFCDCHNGYKGKNCEQDINECESNPCQYNGNCLERSNITLYQMSR 973
            ..||.|||.||..|:.....:.|.|..|::|..|.::.|:|..:||..:|.|::..|        
Zfish   743 SSCLPNPCENGGTCVVNGDSFNCVCKEGWEGSTCTENTNDCNPHPCYNSGTCVDGEN-------- 799

  Fly   974 ITDLPKVFSQPFSFENASGYECVCVPGIIGKNCEININECDSNPCSKHGNCNDGIGTYTCECEPG 1038
                              .|.|.|.||..|.:|.||||||.|:||:....|.|.|..|.|.|.||
Zfish   800 ------------------WYRCECAPGFAGPDCRININECQSSPCAFGSTCVDEINGYRCLCPPG 846

  Fly  1039 FEGTHCEINIDECDRYNPC-------QRGTCYDQIDDYDCD-CDANYGGKNCSVLLKG------- 1088
            ..|..|:..:.     .||       ..|..:::    ||: |....|..:|:::..|       
Zfish   847 RIGPDCQEVVG-----RPCIANGQVTADGAKWEE----DCNICQCQNGRIHCTMMWCGPKSCRTG 902

  Fly  1089 -------------------CDQNPCLNGGACLP-------------------------------- 1102
                               |...||.:.|.|.|                                
Zfish   903 KARGGCPASQSCVPIKEEQCFVKPCPSLGECWPSAPPPPSKCHASFSYQDDSCANITFTFNKENM 967

  Fly  1103 -------YLINEVTHLY---NCTCENGFQGDKCEKTTTLS---MVATSLISVTTEREEGYDINLQ 1154
                   ::.||:.|.|   |.:.|... ...||.:::.|   .::.|.....|:|....||.:|
Zfish   968 PQGLSVEHVCNELRHWYLLKNLSTEYAV-SISCEPSSSASNEIHISISTEEPRTDRSPIKDITVQ 1031

  Fly  1155 FRTTLP----NGVLAFGTTGEK-----NEPVSYILELING----------------------RLN 1188
            ....:.    |..:....||.:     :....|::.|::.                      :.|
Zfish  1032 IIDLVSKHNGNSTIIKAITGVRVHQIPSPKTDYLVPLLSSIFIVLWIFALASAFLWCIHRRRKQN 1096

  Fly  1189 LHSSLLNKWEGVFIGSKLNDSNWHKVFVAINTSHLVLSANDEQAIFPVGSYETANN 1244
            .||:...        |...|:..:.|...:|.....:..:....: |:..||..|:
Zfish  1097 THSNTAT--------SATEDNTTNNVREQLNQIKNPIEKHAAHGV-PIKDYEGKNS 1143

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
crbNP_001247284.1 LamG 91..228 CDD:238058
EGF 269..299 CDD:394967 9/29 (31%)
EGF_CA <311..341 CDD:238011 11/29 (38%)
EGF_CA 386..423 CDD:238011 12/36 (33%)
EGF_CA 425..460 CDD:238011 5/34 (15%)
EGF 466..495 CDD:394967 14/28 (50%)
EGF 605..633 CDD:394967 9/27 (33%)
EGF_CA 716..750 CDD:238011 14/33 (42%)
EGF_CA 753..789 CDD:238011 13/51 (25%)
EGF_CA 792..828 CDD:238011 16/35 (46%)
EGF_CA 830..865 CDD:238011 15/34 (44%)
EGF_CA 868..905 CDD:238011 14/36 (39%)
EGF_CA 907..943 CDD:238011 12/35 (34%)
EGF_CA 1009..1045 CDD:238011 17/35 (49%)
EGF_CA 1047..1082 CDD:238011 7/42 (17%)
Laminin_G_1 1155..1290 CDD:395008 16/121 (13%)
EGF 1316..1346 CDD:394967
Laminin_G_1 1388..1550 CDD:395008
EGF_CA <1593..1622 CDD:238011
Laminin_G_2 1692..1828 CDD:460494
EGF_CA 1901..1937 CDD:238011
EGF_CA 1939..1974 CDD:238011
EGF_CA 2057..2094 CDD:238011
EGF_CA 2096..2133 CDD:238011
EGF_CA 2137..2175 CDD:238011
jag1bNP_571938.2 MNNL 29..182 CDD:462222
DSL 164..226 CDD:128366 7/26 (27%)
EGF_CA 293..331 CDD:238011 15/41 (37%)
EGF 337..365 CDD:394967 11/28 (39%)
EGF_CA 371..407 CDD:238011 20/72 (28%)
EGF_CA 409..444 CDD:238011 11/34 (32%)
EGF_CA 447..482 CDD:238011 17/34 (50%)
EGF_CA 484..520 CDD:238011 8/35 (23%)
EGF_CA 522..557 CDD:238011 14/35 (40%)
EGF_CA 626..662 CDD:238011 16/35 (46%)
EGF_CA 664..699 CDD:238011 15/34 (44%)
EGF 706..736 CDD:394967 14/30 (47%)
EGF 745..775 CDD:394967 12/29 (41%)
EGF_CA 779..814 CDD:238011 13/60 (22%)
EGF_CA 817..853 CDD:238011 17/35 (49%)
VWC_out 860..927 CDD:214565 9/70 (13%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1181..1202
Blue background indicates that the domain is not in the aligned region.

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