DRSC/TRiP Functional Genomics Resources

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Protein Alignment crb and notch3

DIOPT Version :9

Sequence 1:NP_001247284.1 Gene:crb / 42896 FlyBaseID:FBgn0259685 Length:2253 Species:Drosophila melanogaster
Sequence 2:XP_017948007.1 Gene:notch3 / 100494244 XenbaseID:XB-GENE-6450008 Length:2413 Species:Xenopus tropicalis


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
crbNP_001247284.1 LamG 91..228 CDD:238058
EGF_CA 386..423 CDD:238011
EGF_CA 425..460 CDD:238011
EGF 466..495 CDD:278437
EGF 605..633 CDD:278437
EGF_CA 716..750 CDD:238011
EGF_CA 753..789 CDD:238011
EGF_CA 792..828 CDD:238011
EGF_CA 830..865 CDD:238011
EGF_CA 868..905 CDD:238011
EGF_CA 907..943 CDD:238011
EGF_CA 1009..1045 CDD:238011
EGF_CA 1047..1082 CDD:238011
Laminin_G_1 1155..1290 CDD:278483
EGF 1316..1346 CDD:278437
Laminin_G_1 1388..1550 CDD:278483
EGF_CA <1593..1622 CDD:238011
Laminin_G_2 1692..1828 CDD:280389
EGF_CA 1901..1937 CDD:238011
EGF_CA 1939..1974 CDD:238011
EGF_CA 2057..2094 CDD:238011
EGF_CA 2096..2133 CDD:238011
EGF_CA 2137..2175 CDD:238011
notch3XP_017948007.1 EGF_CA 105..139 CDD:238011
EGF_CA 142..179 CDD:238011
DSL <164..217 CDD:366627
EGF_CA 220..256 CDD:238011
EGF_CA 258..295 CDD:238011
EGF_CA 298..333 CDD:238011
EGF_CA 375..413 CDD:238011
EGF_CA 415..451 CDD:238011
EGF_CA 453..489 CDD:238011
EGF_CA 491..526 CDD:238011
EGF_CA 529..564 CDD:238011
EGF_CA 567..602 CDD:238011
EGF 726..756 CDD:333761
EGF_CA 760..796 CDD:238011
EGF_CA 838..874 CDD:238011
EGF_CA 876..912 CDD:238011
EGF_CA 915..950 CDD:238011
EGF_CA 952..988 CDD:238011
EGF_CA 991..1026 CDD:238011
EGF_CA 1029..1063 CDD:238011
EGF_CA 1115..1150 CDD:238011
EGF_CA 1152..1188 CDD:238011
EGF_CA 1190..1232 CDD:238011
EGF_CA 1234..1272 CDD:238011
EGF_CA 1276..1313 CDD:238011
Notch 1410..1443 CDD:365847
Notch 1451..1484 CDD:365847
Notch 1498..1524 CDD:365847
NOD 1531..1582 CDD:369091
NODP 1602..1655 CDD:369464
PHA03095 <1796..>2007 CDD:222980
ANK repeat 1805..1851 CDD:293786
ANK repeat 1853..1884 CDD:293786
ANK repeat 1887..1918 CDD:293786
ANK repeat 1920..1951 CDD:293786
Ank_2 1925..2017 CDD:372319
ANK repeat 1953..1984 CDD:293786
ANK repeat 1986..2017 CDD:293786
Ank_2 1991..>2047 CDD:393464
Med15 2116..>2410 CDD:312941
Atrophin-1 2278..>2412 CDD:367360
DUF3454 2335..2389 CDD:371809
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 47 1.000 Domainoid score I11844
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
22.000

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