DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment crb and jag1

DIOPT Version :9

Sequence 1:NP_001247284.1 Gene:crb / 42896 FlyBaseID:FBgn0259685 Length:2253 Species:Drosophila melanogaster
Sequence 2:XP_002931784.1 Gene:jag1 / 100486874 XenbaseID:XB-GENE-485662 Length:1218 Species:Xenopus tropicalis


Alignment Length:1415 Identity:366/1415 - (25%)
Similarity:523/1415 - (36%) Gaps:489/1415 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   111 SAISFRSCRGGEILAQQYNKNSIVISVLNDFLQISLA--------------------GPAVHGPN 155
            ||:|||                ::|::|...|::|:|                    |....|..
 Frog    11 SALSFR----------------LIIALLCLRLKVSIASGQFELEILSMQNPNGELQSGNCCDGQR 59

  Fly   156 NRLDVKLPYQLLDNRWHTLQFKYE----------YGNLYLHVDRAASIFANSTYNSQFLTNQDIG 210
            |..|.|......|..:.....:|:          :|..|      ..:...:::|.::..|.:..
 Frog    60 NPTDRKCSRDECDTYFKVCLKEYQSRVSAGGACSFGTGY------TPVIGGNSFNLKYSRNNERN 118

  Fly   211 YKDAILILGNSFS---------------------GCLLD--------GPGLQFVNNSTVQNVVFG 246
            .    ::|..||:                     |.|:|        .|..|:  .:..||....
 Frog   119 R----IVLPFSFAWPRSYTLVVEAWDYNNDTNDPGDLIDKALHSGMINPSRQW--QTLKQNAGMT 177

  Fly   247 HCPLTPGP-CSDH------DLFTRLPDNF-------------CLNDPCMG--------------- 276
            |....... |.:|      :.|.|..|:|             || :..||               
 Frog   178 HFEYQIRVICDEHYYGFGCNKFCRPRDDFFGHYTCDQNGNKTCL-EGWMGPECNKAICRQGCSSK 241

  Fly   277 HGTCSSSPEGYECRCTARYSGKNCQKDNGSPCAKNPCENGGSCLENSRGDYQCFCDPNHSGQHCE 341
            ||||.:..   ||||...:.|:.|.|     |..:|....|:|.|    .:||.|:.|..||.|:
 Frog   242 HGTCKTPG---ECRCQYGWQGQYCDK-----CIPHPGCVHGTCNE----PWQCLCETNWGGQLCD 294

  Fly   342 TEVNIHPLCQT-NPCLNNGACVVIGGSGALTCECPKGYAGARCEVDTDECASQPCQNNGSCIDRI 405
            .::|   .|.| .||||.|.|... |.....|.||:||:|..||:....|.|.||.|.|||::..
 Frog   295 KDLN---YCGTYQPCLNGGTCSNT-GPDKYQCSCPEGYSGLNCEIAEHACLSDPCHNGGSCLETS 355

  Fly   406 NGFSCDCSGTGYTGAFCQTNVDECDKNPCLNGGRCFDTYGWYTCQCLDGWGGEICDRPMTCQTQQ 470
            .||.|.|: .|:||..|..|:|||..|||                   |:               
 Frog   356 VGFECQCA-RGWTGPTCSINIDECSPNPC-------------------GY--------------- 385

  Fly   471 CLNGGTCLDKPIGFQCLCPPEYTGELCQIAPSCAQQCPIDSECVGGKCVCKPGSSGPIGHCLPTT 535
               ||||.|...||:|:||.::||:.|||                                    
 Frog   386 ---GGTCQDLVDGFKCICPSQWTGKTCQI------------------------------------ 411

  Fly   536 TTPTPEQEPTTTPRTTPNPNPAIPNTLTTTTKIPPITTSRTLVGTTTGSRRPPQQPLQSPTQRSA 600
                                                                             
 Frog   412 ----------------------------------------------------------------- 411

  Fly   601 SLNACPQENCLNGGTCLGYSGNYSCICASGYTGYNCQTSTGDGASALALTPINCNATNGKCLNGG 665
            ..|.|..:.|:|..:|....|:|.|.|..|:||.||.              ||.|...|:|.|||
 Frog   412 DANECEAKPCVNANSCRNLIGSYYCNCLPGWTGQNCD--------------ININDCLGQCQNGG 462

  Fly   666 TCS--MNGTHCYCAVGYSGDRCEKAEN-C--SP-LN---CQEPMVCVQN--QCLCP---ENKVC- 715
            ||.  :||..|.|..||:|:||||..| |  :| ||   ||:.:    |  |||||   ...:| 
 Frog   463 TCRDLVNGFRCICPPGYAGERCEKDVNECVSNPCLNGGHCQDEI----NGFQCLCPAGFSGNLCQ 523

  Fly   716 ---NQCATQPCQNGGECVDLPNGDYECKCTRGWTGRTCGNDVDECTLHP---------------- 761
               :.|...|||||.:|.:|.. ||.|.|:..:.|:.|.:..|.|...|                
 Frog   524 LDIDYCEPDPCQNGAQCFNLAT-DYFCNCSEDYEGKNCSHLKDHCRTTPCEVIDSCTVAVASNST 587

  Fly   762 ---------KICG-NGICKNEK-GSYKCYCTPGFTGVHCDSDVDECLSFPCLNGATCHNKINAYE 815
                     .:|| :|.|:::. |.:.|.|..||||.:|..::::|.|.||.||.||.:.:|:|:
 Frog   588 PEGVRYISSNVCGPHGKCRSQSGGKFTCECNKGFTGTYCHENINDCESNPCKNGGTCIDGVNSYK 652

  Fly   816 CVCQPGYEGENCEVDIDECGSNPCSNGSTCIDRINNFTCNCIPGMTGRICDIDIDDCVGDPCLNG 880
            |:|..|:||..||.:|::|..|||.||.||.|.:|:|.|.|..|..|:.|......|....|.||
 Frog   653 CICSDGWEGIYCETNINDCSKNPCYNGGTCRDLVNDFYCECKNGWKGKTCHSRDSQCDEATCNNG 717

  Fly   881 GQCIDQLGGFRCDCSGTGYEGENCEL-NIDECLSNPCTNGAKCLDRVKDYFCDCHNGYKGKNCEQ 944
            |.|.|:...|:|.|. .|:||..|.: ....||.|||.||..|:.|...:.|.|..|::|..|.|
 Frog   718 GTCYDEGDTFKCICP-AGWEGATCNIARNSSCLPNPCFNGGTCVVRGDSFTCVCKEGWEGPTCSQ 781

  Fly   945 DINECESNPCQYNGNCLERSNITLYQMSRITDLPKVFSQPFSFENASGYECVCVPGIIGKNCEIN 1009
            :.|:|..:||..:|.|::..|                          .|.|.|.||..|.:|.||
 Frog   782 NTNDCSPHPCYNSGTCVDGDN--------------------------WYRCECAPGFAGPDCRIN 820

  Fly  1010 INECDSNPCSKHGNCNDGIGTYTCECEPGFEGTHCEINIDECDRYNPC-------QRGTCYDQID 1067
            ||||.|:||:....|.|.|..|.|.|.||..|..|:   :...|  ||       ..|..:|.  
 Frog   821 INECQSSPCAFGATCIDEINGYRCTCPPGRSGPRCQ---EVTGR--PCITNGHMMPDGAKWDD-- 878

  Fly  1068 DYDCD-CDANYGGKNCSVLLKG---CD---QNPCLNGGACLPYLINEVTHLYNCTCENGFQGD-- 1123
              ||: |....|...||.:..|   ||   .:.|..|..|:|...|   |.:...|..  .|:  
 Frog   879 --DCNSCQCLNGKVTCSKVWCGPQRCDIHGSSECPAGQTCVPIRDN---HCFVPPCTG--VGECW 936

  Fly  1124 ---------KCEKTTTLSMVATSLISVTTEREEGYDINLQFRTTLPNGVLAFGTTGEKNEPVSYI 1179
                     ||....:....:.:.|:.|..:|                :::.|.|.|     |..
 Frog   937 PTNQPPVKTKCNANASYQDASCANITFTFNKE----------------MMSPGLTTE-----SIC 980

  Fly  1180 LELINGRLNLHSSLLNKWEGVFIGSKLNDSNWHKVFVAINTSHLVLSANDE-----------QAI 1233
            .||.|  ||:..::..:: .::|..:|:.|       |.|..|:.:|..:.           :.|
 Frog   981 NELRN--LNILKNVSAEY-SIYITCELSPS-------ANNEIHVAISVEENGDGRNPVKDITERI 1035

  Fly  1234 FPVGSYETANNSQPSFPRTYL--------------GGT---IPNLKSYLRHLTHQPSAFVGCMQD 1281
            ..:.|...|||       |::              .||   :|.|.|.|      ..|:|.|:..
 Frog  1036 IDLVSKRDANN-------TFIASVAEVRVQRRQAKNGTDFLVPLLSSIL------TVAWVCCLVT 1087

  Fly  1282 IMVNGKW-IFPDEQDANISYTKLENVQSGCPRTE--QCKPNPCHSNGECT 1328
            ...   | |....:.::.|:|..|:..:...|.:  |.| ||...:|..|
 Frog  1088 AFY---WCIRKRRKQSSHSHTASEDNTTNNVREQLNQIK-NPIEKHGANT 1133

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
crbNP_001247284.1 LamG 91..228 CDD:238058 26/167 (16%)
EGF_CA 386..423 CDD:238011 15/36 (42%)
EGF_CA 425..460 CDD:238011 8/34 (24%)
EGF 466..495 CDD:278437 11/28 (39%)
EGF 605..633 CDD:278437 9/27 (33%)
EGF_CA 716..750 CDD:238011 13/33 (39%)
EGF_CA 753..789 CDD:238011 14/62 (23%)
EGF_CA 792..828 CDD:238011 15/35 (43%)
EGF_CA 830..865 CDD:238011 16/34 (47%)
EGF_CA 868..905 CDD:238011 13/36 (36%)
EGF_CA 907..943 CDD:238011 13/35 (37%)
EGF_CA 1009..1045 CDD:238011 17/35 (49%)
EGF_CA 1047..1082 CDD:238011 9/42 (21%)
Laminin_G_1 1155..1290 CDD:278483 32/163 (20%)
EGF 1316..1346 CDD:278437 5/13 (38%)
Laminin_G_1 1388..1550 CDD:278483
EGF_CA <1593..1622 CDD:238011
Laminin_G_2 1692..1828 CDD:280389
EGF_CA 1901..1937 CDD:238011
EGF_CA 1939..1974 CDD:238011
EGF_CA 2057..2094 CDD:238011
EGF_CA 2096..2133 CDD:238011
EGF_CA 2137..2175 CDD:238011
jag1XP_002931784.1 MNNL 32..107 CDD:369454 9/80 (11%)
DSL 167..229 CDD:366627 13/64 (20%)
EGF_CA 296..334 CDD:238011 16/41 (39%)
EGF 340..370 CDD:333761 15/30 (50%)
EGF_CA 374..410 CDD:238011 20/72 (28%)
EGF_CA 412..447 CDD:238011 12/34 (35%)
EGF_CA 450..485 CDD:238011 17/34 (50%)
EGF_CA 487..523 CDD:238011 13/39 (33%)
EGF_CA 525..560 CDD:238011 13/35 (37%)
EGF_CA 629..665 CDD:238011 15/35 (43%)
EGF_CA 667..702 CDD:238011 16/34 (47%)
EGF 709..739 CDD:333761 13/30 (43%)
EGF 748..778 CDD:333761 13/29 (45%)
EGF_CA 782..817 CDD:238011 13/60 (22%)
EGF_CA 820..856 CDD:238011 17/35 (49%)
VWC_out 863..929 CDD:214565 18/72 (25%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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