DRSC/TRiP Functional Genomics Resources

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Protein Alignment shps and Kdm1a

DIOPT Version :10

Sequence 1:NP_651239.1 Gene:shps / 42892 FlyBaseID:FBgn0286199 Length:477 Species:Drosophila melanogaster
Sequence 2:XP_006539392.1 Gene:Kdm1a / 99982 MGIID:1196256 Length:877 Species:Mus musculus


Alignment Length:450 Identity:80/450 - (17%)
Similarity:152/450 - (33%) Gaps:151/450 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 VLIVGGGLSGLASA--LKILAMESTLKVRMIEASDALGGLMG--QNSTRLVDAAQQDMLAL--LT 72
            |:|:|.|:||||:|  |:...|:.||    :||.|.:||.:.  :....:.|.....:..|  ..
Mouse   302 VIIIGSGVSGLAAARQLQSFGMDVTL----LEARDRVGGRVATFRKGNYVADLGAMVVTGLGGNP 362

  Fly    73 LIHLSPRRRRSISGSLRRCWDLDRGLTAMPAKFELGRYIDMLDLRMPKFR----SKRFNLRERVS 133
            :..:|.:....::...::|           ..:|.....|  .:::||.:    .:.||   |:.
Mouse   363 MAVVSKQVNMELAKIKQKC-----------PLYEANGQAD--TVKVPKEKDEMVEQEFN---RLL 411

  Fly   134 NMEQHICHHLFFSKSRNFMLNLVQLVCGVPANEVDYDVFMSVCSSCGGLKVLIDFYFTYPTSFYE 198
            ....::.|.|.|:...|..::|.|.:                                      |
Mouse   412 EATSYLSHQLDFNVLNNKPVSLGQAL--------------------------------------E 438

  Fly   199 ISTQMLIENILEQLQFIKIILNCRAVRLEHFKNYVQVTDDQGNKHTAQAAILAIPWNKVQKLHFE 263
            :..|:..:::.::             ::||:|..|:..::           |....||:  ::.:
Mouse   439 VVIQLQEKHVKDE-------------QIEHWKKIVKTQEE-----------LKELLNKM--VNLK 477

  Fly   264 PRIPKVFLPRTTSRSGRKGRQVISQFQLRYGKSVWTDLGYSGNFLSSQPMVSGHECRMSSFCGYV 328
            .:|.::......:...:..|.:.::|.:   ||...||                    ::.|   
Mouse   478 EKIKELHQQYKEASEVKPPRDITAEFLV---KSKHRDL--------------------TALC--- 516

  Fly   329 LHLPEDQDEVLQDVVDLLAEHFG--EEMRQPLECQCFTDELNVAQHKPQTKPWHRVIWSSSSAVG 391
                ::.||        |||..|  ||..|.||....:| :.::....|...||......::|..
Mouse   517 ----KEYDE--------LAETQGKLEEKLQELEANPPSD-VYLSSRDRQILDWHFANLEFANATP 568

  Fly   392 TSYRSLMGGAVQSGFRAAVNAVFVVRPQVVSWKDMLVEQPKNGQDVVSAGRIRGLLSRLN 451
            .|..||........|....:.:.|                :||...|......||..:||
Mouse   569 LSTLSLKHWDQDDDFEFTGSHLTV----------------RNGYSCVPVALAEGLDIKLN 612

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
shpsNP_651239.1 YobN 9..409 CDD:440844 72/406 (18%)
Kdm1aXP_006539392.1 PHA03378 <39..>99 CDD:223065
PLN02328 204..850 CDD:215187 79/449 (18%)
Blue background indicates that the domain is not in the aligned region.

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