DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment shps and PAO1

DIOPT Version :10

Sequence 1:NP_651239.1 Gene:shps / 42892 FlyBaseID:FBgn0286199 Length:477 Species:Drosophila melanogaster
Sequence 2:NP_196874.1 Gene:PAO1 / 831215 AraportID:AT5G13700 Length:472 Species:Arabidopsis thaliana


Alignment Length:527 Identity:91/527 - (17%)
Similarity:172/527 - (32%) Gaps:203/527 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 VLIVGGGLSGLASALKILAMESTLKVRMIEASDALGGLM---------------------GQNST 57
            |:|:|.|:||: ||.|:|.......|.::||:|.:||.:                     |:.|.
plant     6 VIIIGAGISGI-SAAKVLVENGVEDVLILEATDRIGGRIHKQNFGDVPVELGAGWIAGVGGKESN 69

  Fly    58 RLVDAAQQDMLALLTLIHLSPRRRRSISGSLRRCWD---------LDRGLTAMPAKFELGRYIDM 113
            .:.:.|.:                    .:||.|:.         .||.....|.......|...
plant    70 PVWELASR--------------------FNLRTCFSDYTNARFNIYDRSGKIFPTGIASDSYKKA 114

  Fly   114 LDLRMPKFRSKRFNLRERVSN---------MEQHICHHLFFSKSRNFMLNLVQLVCGVP-ANEVD 168
            :|..:.|.:|.......:|:.         :|..|          :|:|:..::....| :..||
plant   115 VDSAILKLKSLEAQCSGQVAEEAPSSPKTPIELAI----------DFILHDFEMAEVEPISTYVD 169

  Fly   169 YDVFMSVCSSCGGLKVLIDFYFTYPTSFYEISTQMLIE---NILEQLQFIKIILNCRAVRLEHFK 230
            :          |..:.|:.....|....|:::.:.|:.   |||:    .::.||.....::..:
plant   170 F----------GEREFLVADERGYECLLYKMAEEFLVTSHGNILD----YRLKLNQVVREVQQSR 220

  Fly   231 NYVQVTDDQGNKHTAQAAILAIPWNKVQK--LHFEPRIP----------------KVFL------ 271
            |.|.|..:.|:.:.|...|::.....:|.  |.|:|.:|                |:||      
plant   221 NGVVVKTEDGSVYEANYVIVSASIGVLQSDLLSFQPLLPRWKTEAIQKCDVMVYTKIFLKFPQCF 285

  Fly   272 ---------------------------------------------PRTTSRSGRKG-RQVISQFQ 290
                                                         .|..::|.::. ::.:|..:
plant   286 WPCGPGQEFFIYAHEQRGYFTFWQHMENAYPGSNILVVTLTNEQSKRVEAQSDQETMKEAMSVLR 350

  Fly   291 LRYGKSV-----------WTDLGYSGNFLSSQPMVSGHEC--RMSSFCGYVLHLPEDQDEVLQDV 342
            ..:|.::           |.:....|:: |:.||:|.::.  .:.:..|.:....|...|.....
plant   351 DMFGATIPYATDILVPRWWNNRFQRGSY-SNYPMISDNQLLQNIKAPVGRIFFTGEHTSEKFSGY 414

  Fly   343 VDLLAEHFG------------EEMRQPLECQ---CFTDELNVAQHKPQTKPWHRVIWSSSSAVGT 392
            |     |.|            |||:|.|..|   .||:.|.:...||           ::|.:.|
plant   415 V-----HGGYLAGIDTSKSLLEEMKQSLLLQPLLAFTESLTLTHQKP-----------NNSQIYT 463

  Fly   393 SYRSLMG 399
            :.:.:.|
plant   464 NVKFISG 470

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
shpsNP_651239.1 YobN 9..409 CDD:440844 91/527 (17%)
PAO1NP_196874.1 PLN02676 20..447 CDD:215362 76/476 (16%)

Return to query results.
Submit another query.