DRSC/TRiP Functional Genomics Resources

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Protein Alignment shps and kdm1a

DIOPT Version :9

Sequence 1:NP_651239.1 Gene:shps / 42892 FlyBaseID:FBgn0286199 Length:477 Species:Drosophila melanogaster
Sequence 2:NP_001229924.1 Gene:kdm1a / 558450 ZFINID:ZDB-GENE-030131-7828 Length:833 Species:Danio rerio


Alignment Length:459 Identity:78/459 - (16%)
Similarity:151/459 - (32%) Gaps:167/459 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 VLIVGGGLSGLASALKILAMESTLKVRMIEASDALGG------------------LMGQNSTRLV 60
            |:::|.|:||||:|.::.:.  .:.|.::|:.|.:||                  :.|.....:.
Zfish   255 VIVIGAGVSGLAAARQLQSF--GMDVTVLESRDRVGGRVATFRKGNYVADLGAMVVTGLGGNPMA 317

  Fly    61 DAAQQDMLALLTLIHLSPRRRRSISGSLRRCWDLDRGLTAMPAKFELGRYIDMLDLRMPKFRSKR 125
            ..::|..:.|..:....|....:.... .||       |::|.:.:     :|::        :.
Zfish   318 VVSKQVNMELAKIKQKCPLYEANGQAG-ERC-------TSVPKEKD-----EMVE--------QE 361

  Fly   126 FNLRERVSNMEQHICHHLFFSKSRNFMLNLVQLVCGVPANEVDYDVFMSVCSSCGGLKVLIDFYF 190
            ||   |:.....::.|.|.|:...|..::|.|.:                               
Zfish   362 FN---RLLEATSYLSHQLDFNFLNNKPVSLGQAL------------------------------- 392

  Fly   191 TYPTSFYEISTQMLIENILEQLQFIKIILNCRAVRLEHFKNYVQVTD---DQGNKHTAQAAILAI 252
                   |:..|:..:::.::             ::||:|..|:..:   |..||       :..
Zfish   393 -------EVVIQLQEKHVKDE-------------QIEHWKKIVKTQEELKDLLNK-------MVT 430

  Fly   253 PWNKVQKLHFEPRIPKVFLPRTTSRSGRKGRQVISQFQLRYGKSVWTDLGYSGNFLSSQPMVSGH 317
            ...||::||.:.:......|         .|.:.::|.:   ||...||                
Zfish   431 TKEKVKELHQQYKEASEVKP---------PRDITAEFLV---KSKHRDL---------------- 467

  Fly   318 ECRMSSFCGYVLHLPEDQDEVLQDVVDLLAEHFGEEMRQPLECQCFTDELNVAQHKPQTKPWHRV 382
                ::.|       ::.||:::..|.|      ||..|.||....:| :.::....|...||..
Zfish   468 ----TALC-------KEYDELVEMQVKL------EERLQELEANPPSD-VYLSSRDRQILDWHFA 514

  Fly   383 IWSSSSAVGTSYRSLMGGAVQSGFRAAVNAVFVVRPQVVSWKDMLVEQPKNGQDVVSAGRIRGLL 447
            ....::|...|..||........|....:.:.|                :||...|......||.
Zfish   515 NLEFANATPLSTLSLKHWDQDDDFEFTGSHLTV----------------RNGYSCVPVALAEGLD 563

  Fly   448 SRLN 451
            .:||
Zfish   564 IKLN 567

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
shpsNP_651239.1 NADB_Rossmann 11..>53 CDD:304358 13/56 (23%)
Amino_oxidase 21..409 CDD:279874 67/408 (16%)
kdm1aNP_001229924.1 SWIRM 151..238 CDD:282311
NAD_binding_8 257..315 CDD:290186 13/59 (22%)
Amino_oxidase 262..805 CDD:279874 75/452 (17%)
SKA2 371..>441 CDD:302619 19/127 (15%)
Prefoldin 393..494 CDD:298833 30/165 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1231
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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