DRSC/TRiP Functional Genomics Resources

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Protein Alignment shps and kdm1a

DIOPT Version :10

Sequence 1:NP_651239.1 Gene:shps / 42892 FlyBaseID:FBgn0286199 Length:477 Species:Drosophila melanogaster
Sequence 2:NP_001229924.1 Gene:kdm1a / 558450 ZFINID:ZDB-GENE-030131-7828 Length:833 Species:Danio rerio


Alignment Length:459 Identity:78/459 - (16%)
Similarity:151/459 - (32%) Gaps:167/459 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 VLIVGGGLSGLASALKILAMESTLKVRMIEASDALGG------------------LMGQNSTRLV 60
            |:::|.|:||||:|.::.:.  .:.|.::|:.|.:||                  :.|.....:.
Zfish   255 VIVIGAGVSGLAAARQLQSF--GMDVTVLESRDRVGGRVATFRKGNYVADLGAMVVTGLGGNPMA 317

  Fly    61 DAAQQDMLALLTLIHLSPRRRRSISGSLRRCWDLDRGLTAMPAKFELGRYIDMLDLRMPKFRSKR 125
            ..::|..:.|..:....|....:.... .||       |::|.:.:     :|::        :.
Zfish   318 VVSKQVNMELAKIKQKCPLYEANGQAG-ERC-------TSVPKEKD-----EMVE--------QE 361

  Fly   126 FNLRERVSNMEQHICHHLFFSKSRNFMLNLVQLVCGVPANEVDYDVFMSVCSSCGGLKVLIDFYF 190
            ||   |:.....::.|.|.|:...|..::|.|.:                               
Zfish   362 FN---RLLEATSYLSHQLDFNFLNNKPVSLGQAL------------------------------- 392

  Fly   191 TYPTSFYEISTQMLIENILEQLQFIKIILNCRAVRLEHFKNYVQVTD---DQGNKHTAQAAILAI 252
                   |:..|:..:::.::             ::||:|..|:..:   |..||       :..
Zfish   393 -------EVVIQLQEKHVKDE-------------QIEHWKKIVKTQEELKDLLNK-------MVT 430

  Fly   253 PWNKVQKLHFEPRIPKVFLPRTTSRSGRKGRQVISQFQLRYGKSVWTDLGYSGNFLSSQPMVSGH 317
            ...||::||.:.:......|         .|.:.::|.:   ||...||                
Zfish   431 TKEKVKELHQQYKEASEVKP---------PRDITAEFLV---KSKHRDL---------------- 467

  Fly   318 ECRMSSFCGYVLHLPEDQDEVLQDVVDLLAEHFGEEMRQPLECQCFTDELNVAQHKPQTKPWHRV 382
                ::.|       ::.||:::..|.|      ||..|.||....:| :.::....|...||..
Zfish   468 ----TALC-------KEYDELVEMQVKL------EERLQELEANPPSD-VYLSSRDRQILDWHFA 514

  Fly   383 IWSSSSAVGTSYRSLMGGAVQSGFRAAVNAVFVVRPQVVSWKDMLVEQPKNGQDVVSAGRIRGLL 447
            ....::|...|..||........|....:.:.|                :||...|......||.
Zfish   515 NLEFANATPLSTLSLKHWDQDDDFEFTGSHLTV----------------RNGYSCVPVALAEGLD 563

  Fly   448 SRLN 451
            .:||
Zfish   564 IKLN 567

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
shpsNP_651239.1 YobN 9..409 CDD:440844 70/415 (17%)
kdm1aNP_001229924.1 PLN02328 157..805 CDD:215187 78/459 (17%)
COG1340 <375..>493 CDD:440951 34/220 (15%)

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