DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment shps and si:ch211-127i16.2

DIOPT Version :9

Sequence 1:NP_651239.1 Gene:shps / 42892 FlyBaseID:FBgn0286199 Length:477 Species:Drosophila melanogaster
Sequence 2:XP_021327915.1 Gene:si:ch211-127i16.2 / 558050 ZFINID:ZDB-GENE-091204-54 Length:523 Species:Danio rerio


Alignment Length:535 Identity:107/535 - (20%)
Similarity:202/535 - (37%) Gaps:143/535 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 ELDVLIVGGGLSGLASALKILAMESTLKVRMIEASDALGG------LMGQNSTRLVDAAQQ---- 65
            :.||::||.|||||::|.::......|.|.::||.|.:||      |...|.....|...|    
Zfish     5 QFDVVVVGAGLSGLSAARRLQKRNPRLSVLVLEARDRVGGRTVSEDLPAANGVEQWDMGGQWVSS 69

  Fly    66 DMLALLTLI----------HLSPRRRRSISGSLRRCWDLDRGLTAMPAKFELGRYIDMLDLRMPK 120
            ..:.::.||          :...::...|.|...:                    |.|.:..:|:
Zfish    70 SQIHVMELIKEFGVEVFTQYTEGKKVHHIGGPNAK--------------------IKMYNTTVPQ 114

  Fly   121 FR-----------------SKRFNLRERVS--NMEQHICHHLFFSKSRNFMLNLV--------QL 158
            |.                 :|..::.:.:|  |.|.:....|:....:|.....:        ::
Zfish   115 FSPLVMLDFIQVMWKVDKLTKTISVEDPMSSPNAELYDSMTLYTFMEQNIWTKDIKEELAVCSRI 179

  Fly   159 VCGVPANEVDYDVFMSVCSSCGGLKVLIDFYFTYPTSFYEI----STQMLIENILEQLQFIKIIL 219
            |.|:..:::.:..|:...::.||...|::   |.|.|..|.    .||.|.:.::||:...::.|
Zfish   180 VFGLETSQISFLFFLLYSAAAGGTLRLLE---TSPGSGQEFRVKGGTQQLSKMLVEQIGSDRVRL 241

  Fly   220 NCRAVRLEHFKNYVQVTDDQGNKHTAQAAILAIPWNKVQKLHFEPRIPKVFLPRTTSRSGRKGRQ 284
            ......:......::||...|.. :.:|.|:|.|.:...::|:||.:|           ..:.|.
Zfish   242 GAAVTAICQDSENIKVTTSAGTV-SCKAVIVACPSHLAAQIHYEPPLP-----------SERQRL 294

  Fly   285 V-------ISQFQLRYGKSVWTDLGYSG--------------NFLSSQP--------MVSGHECR 320
            :       :::|.:.|..:.|.:.|:||              .|.::.|        .::|.:.|
Zfish   295 IQSLPMGHMTKFIITYPTAFWREKGFSGEIVVRPSESCPLSVTFDATSPKGNPALVGFITGIQAR 359

  Fly   321 MSSFCGYVLHLPEDQDEVLQDVVDLLAE------HFGEE--MRQPLECQC----FTDELNVAQHK 373
              .:|.  ..|.|.:|.|:..:|..|..      |:.|:  .::.....|    .|..:....|.
Zfish   360 --DWCD--KKLEERRDAVISSLVKYLGPEASTYIHYAEKDWGKEQYSGGCPVNVMTPGMLTFYHP 420

  Fly   374 PQTKPWHRVIWSSSSAVGTSYRSLMGGAVQSGFRAAVNAVFVVRPQVVSWKDMLV-------EQP 431
            ...||..|:.|:.:. ..|.:...:.||||:|.|||:..:..:.|..:|.:::..       ..|
Zfish   421 SLRKPCGRIHWAGTE-TATIWCGYLDGAVQAGQRAAMEVLAQLCPSSLSREELNAVRESLKPRAP 484

  Fly   432 KNGQDVVSAGRIRGL 446
            :.|    |.||.|.|
Zfish   485 RKG----SKGRSRSL 495

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
shpsNP_651239.1 NADB_Rossmann 11..>53 CDD:304358 18/47 (38%)
Amino_oxidase 21..409 CDD:279874 91/479 (19%)
si:ch211-127i16.2XP_021327915.1 Amino_oxidase 15..459 CDD:307636 93/483 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1231
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 89 1.000 Inparanoid score I5105
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1151887at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR43563
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
54.970

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