DRSC/TRiP Functional Genomics Resources

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Protein Alignment shps and Lao1

DIOPT Version :9

Sequence 1:NP_651239.1 Gene:shps / 42892 FlyBaseID:FBgn0286199 Length:477 Species:Drosophila melanogaster
Sequence 2:NP_001100152.1 Gene:Lao1 / 298483 RGDID:1310787 Length:519 Species:Rattus norvegicus


Alignment Length:520 Identity:98/520 - (18%)
Similarity:172/520 - (33%) Gaps:198/520 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 VLIVGGGLSGLASALKILAMESTLKVRMIEASDALGGLMGQNSTRLVDAAQQDMLALLTLIHLSP 78
            :::||.|::||.:| |:| .::..:|.::|||:.:||                  .::||     
  Rat    60 IVVVGAGMAGLVAA-KLL-QDAGHEVTILEASNHIGG------------------RVVTL----- 99

  Fly    79 RRRRSISGSLRRCWDLDRGLTAMPAKFELGRYIDMLDLRMPKFRS------KRFNLRERVSNMEQ 137
              |....|     |           .||||      .:|:|:...      ::|.|  :::|..|
  Rat   100 --RNKEEG-----W-----------HFELG------PMRIPESHRIIHTYIQKFGL--KLNNFTQ 138

  Fly   138 HICHHLFFSKSRNFMLNLVQL---VCGVP---------ANEVDYDVFMSV-CSSCGGLKVLIDFY 189
            |..:..:..:...:..:.|:.   :.|.|         |.::.|.....| .|:|   ..|:..|
  Rat   139 HDNNTWYLLRGHRYRASEVKANPEILGYPLRPSEKNKTAEDLFYQAITKVKASNC---SQLLSLY 200

  Fly   190 FTYPTSFYEISTQMLIENILEQL--------QFIKIILNCRAVRLEHFKN--YVQVTD--DQ--- 239
            .:|.|..|.:...||....:|.:        .|.:.:|....:.....||  :.::|.  ||   
  Rat   201 DSYSTKAYLLKEGMLSRGAVEMIGDMMNENAGFYRSLLESLRIANIFTKNDQFTEITGGFDQLPN 265

  Fly   240 ---------------------GNKH------------------TAQAAILAIPWNKVQKLHFEPR 265
                                 ||:.                  ||...|::......:.:.|:|.
  Rat   266 SLNDSLKPGTIHLGSKVERVVGNESKVEVLYRTDGPTSALYNLTADYVIISASAKATRLIAFQPP 330

  Fly   266 IPKVFLPRTTSRSGRKGRQVISQFQLRYGKSVWTDLGYS-----GNFL----SSQPMVSGHECRM 321
            :....:....|.......:||.....|:.:......|||     ..|:    .|:|...|  ..:
  Rat   331 LSPEKIRALRSVHYNSATKVIFVCNERFWEKDGIHGGYSITDRPSRFIYYPSYSRPSSKG--ILL 393

  Fly   322 SSFC------GYVLHLPEDQDEVLQDVVDLLAEHF--GEEMRQPLECQCFTDELNVAQHKPQTKP 378
            :||.      .:....|....:::.|  ||.|.|.  .||:::    .|           |:::.
  Rat   394 ASFTMDDDSFFFTALKPNQVVDIILD--DLAAVHLIPKEELKR----MC-----------PKSEV 441

  Fly   379 WHRVIWS------SSSAVGTSYRSL--------------------------MGGAVQSGFRAAVN 411
            .|   ||      .|.|..|.|:.|                          :..|::||.|||.|
  Rat   442 KH---WSLDPFTIGSYAEFTPYQFLDDLKQLSQTEGRIYFAGEHTSLPHAWIETAIKSGIRAAKN 503

  Fly   412  411
              Rat   504  503

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
shpsNP_651239.1 NADB_Rossmann 11..>53 CDD:304358 14/38 (37%)
Amino_oxidase 21..409 CDD:279874 92/509 (18%)
Lao1NP_001100152.1 NAD_binding_8 62..>125 CDD:290186 25/111 (23%)
Amino_oxidase 67..504 CDD:279874 95/513 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166343402
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1231
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.740

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