DRSC/TRiP Functional Genomics Resources

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Protein Alignment shps and Lao1

DIOPT Version :10

Sequence 1:NP_651239.1 Gene:shps / 42892 FlyBaseID:FBgn0286199 Length:477 Species:Drosophila melanogaster
Sequence 2:NP_001100152.1 Gene:Lao1 / 298483 RGDID:1310787 Length:519 Species:Rattus norvegicus


Alignment Length:520 Identity:98/520 - (18%)
Similarity:172/520 - (33%) Gaps:198/520 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 VLIVGGGLSGLASALKILAMESTLKVRMIEASDALGGLMGQNSTRLVDAAQQDMLALLTLIHLSP 78
            :::||.|::||.:| |:| .::..:|.::|||:.:||                  .::||     
  Rat    60 IVVVGAGMAGLVAA-KLL-QDAGHEVTILEASNHIGG------------------RVVTL----- 99

  Fly    79 RRRRSISGSLRRCWDLDRGLTAMPAKFELGRYIDMLDLRMPKFRS------KRFNLRERVSNMEQ 137
              |....|     |           .||||      .:|:|:...      ::|.|  :::|..|
  Rat   100 --RNKEEG-----W-----------HFELG------PMRIPESHRIIHTYIQKFGL--KLNNFTQ 138

  Fly   138 HICHHLFFSKSRNFMLNLVQL---VCGVP---------ANEVDYDVFMSV-CSSCGGLKVLIDFY 189
            |..:..:..:...:..:.|:.   :.|.|         |.::.|.....| .|:|   ..|:..|
  Rat   139 HDNNTWYLLRGHRYRASEVKANPEILGYPLRPSEKNKTAEDLFYQAITKVKASNC---SQLLSLY 200

  Fly   190 FTYPTSFYEISTQMLIENILEQL--------QFIKIILNCRAVRLEHFKN--YVQVTD--DQ--- 239
            .:|.|..|.:...||....:|.:        .|.:.:|....:.....||  :.::|.  ||   
  Rat   201 DSYSTKAYLLKEGMLSRGAVEMIGDMMNENAGFYRSLLESLRIANIFTKNDQFTEITGGFDQLPN 265

  Fly   240 ---------------------GNKH------------------TAQAAILAIPWNKVQKLHFEPR 265
                                 ||:.                  ||...|::......:.:.|:|.
  Rat   266 SLNDSLKPGTIHLGSKVERVVGNESKVEVLYRTDGPTSALYNLTADYVIISASAKATRLIAFQPP 330

  Fly   266 IPKVFLPRTTSRSGRKGRQVISQFQLRYGKSVWTDLGYS-----GNFL----SSQPMVSGHECRM 321
            :....:....|.......:||.....|:.:......|||     ..|:    .|:|...|  ..:
  Rat   331 LSPEKIRALRSVHYNSATKVIFVCNERFWEKDGIHGGYSITDRPSRFIYYPSYSRPSSKG--ILL 393

  Fly   322 SSFC------GYVLHLPEDQDEVLQDVVDLLAEHF--GEEMRQPLECQCFTDELNVAQHKPQTKP 378
            :||.      .:....|....:::.|  ||.|.|.  .||:::    .|           |:::.
  Rat   394 ASFTMDDDSFFFTALKPNQVVDIILD--DLAAVHLIPKEELKR----MC-----------PKSEV 441

  Fly   379 WHRVIWS------SSSAVGTSYRSL--------------------------MGGAVQSGFRAAVN 411
            .|   ||      .|.|..|.|:.|                          :..|::||.|||.|
  Rat   442 KH---WSLDPFTIGSYAEFTPYQFLDDLKQLSQTEGRIYFAGEHTSLPHAWIETAIKSGIRAAKN 503

  Fly   412  411
              Rat   504  503

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
shpsNP_651239.1 YobN 9..409 CDD:440844 95/516 (18%)
Lao1NP_001100152.1 YobN 51..504 CDD:440844 98/520 (19%)

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