DRSC/TRiP Functional Genomics Resources

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Protein Alignment shps and 4930438A08Rikl

DIOPT Version :10

Sequence 1:NP_651239.1 Gene:shps / 42892 FlyBaseID:FBgn0286199 Length:477 Species:Drosophila melanogaster
Sequence 2:XP_006246474.1 Gene:4930438A08Rikl / 287305 RGDID:1308564 Length:536 Species:Rattus norvegicus


Alignment Length:557 Identity:110/557 - (19%)
Similarity:192/557 - (34%) Gaps:189/557 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 QTPE-LDVLIVGGGLSGLASALKILAMESTLKVRMIEASDALGGLMGQNSTRLVDAAQQ--DMLA 69
            ||.| ..|:::|.|::||.:| ||| .::..:|.::|||..:||.:   .|..|..|..  ::.|
  Rat    57 QTAERKQVVVIGAGMAGLTAA-KIL-QDAGHQVTVLEASGRVGGRI---ETHRVPGAHWYIELGA 116

  Fly    70 L-----------------LTLIHLSPRRRRS---ISGSLRR--CWDLDRGLTAMPAKF-ELGRYI 111
            :                 |.|....|...::   ::|..:|  ....|.||.....|. |:|:..
  Rat   117 MRIPINHRFSHELIKRFGLMLKEFCPCNNQTWVLVNGVRQRSGAVQADPGLLGYSVKADEMGKTA 181

  Fly   112 DMLDLRMPKFRSKRFNLRERVSNMEQHICHHLF-----FSKSRNFMLNLVQLVCGVPANEVDYDV 171
            :.|      |.:   :||:.|..::...|..:.     || ::.:::.:..|             
  Rat   182 EQL------FDA---SLRKIVEELKNSSCQEVLEKYDSFS-TKEYLIKVGNL------------- 223

  Fly   172 FMSVCSSCGGLKVLIDFYFTYPTSFYEISTQML--IENILEQLQFIKII---------------- 218
                  |.|.::::.|...| .:.:||..|:.|  |.:..::.:|.:|:                
  Rat   224 ------SRGAVQMIGDMLNT-DSGYYEAFTETLRGIISFFQEPRFDEIVGGFDQLPQALHNSLLP 281

  Fly   219 ----LNCRAVRLEHFKNYVQVTDDQGN------KHTAQAAILAIPWNKVQKLHFEPRIPKVFLPR 273
                ....|..:|...:||.||....:      :.||...::|......:.|.|:|       |.
  Rat   282 GTVWFYSPAEEVERSGDYVHVTYKTPDPLQPRARLTADFVVVATTAKAARLLRFQP-------PL 339

  Fly   274 TTSRSG-------RKGRQVISQFQLRYGKSVWTDLG-YSGNFLSSQPMVSGHECRMSSFCGYVLH 330
            :.|:..       ....:||...:.|:    |...| :||...:.:|         |.|..|..|
  Rat   340 SLSKQDALRSVHYNSATKVILACKQRF----WERDGIFSGKSTTDRP---------SRFIYYPNH 391

  Fly   331 L-PE-----------DQDEVL------QDVVDLLAEHFGEEMRQPLECQCFTDELNVAQHKPQTK 377
            : |.           |.|.|.      ..|||::.:.......:|.|      ||.........|
  Rat   392 IFPNGAGVILASYTLDDDSVFLTALDHSRVVDIVLDDLAAIHNRPKE------ELRDLCPYSAIK 450

  Fly   378 PWHRVIWSSSS-AVGTSYRSL--------------------------MGGAVQSGFRAAVNAVFV 415
            .|.:..:|... |..|.|:.:                          :..|::||.|.|.|    
  Rat   451 NWSQDPYSMGGFAFFTPYQYVDYAQELSQPEGPVFFAGEHTDLPHGWIDTAIKSGLRVARN---- 511

  Fly   416 VRPQVVSWKDMLVEQPKNGQDVVSAGRIRGLLSRLNL 452
            ::..|   ...|...|:|         |:|..|:..|
  Rat   512 IQESV---NLALTRNPRN---------IKGHFSKSEL 536

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
shpsNP_651239.1 YobN 9..409 CDD:440844 99/511 (19%)
4930438A08RiklXP_006246474.1 NirB <1..>99 CDD:440863 17/43 (40%)
YobN 55..512 CDD:440844 102/519 (20%)

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