DRSC/TRiP Functional Genomics Resources

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Protein Alignment shps and Kdm1b

DIOPT Version :10

Sequence 1:NP_651239.1 Gene:shps / 42892 FlyBaseID:FBgn0286199 Length:477 Species:Drosophila melanogaster
Sequence 2:XP_006516976.1 Gene:Kdm1b / 218214 MGIID:2145261 Length:834 Species:Mus musculus


Alignment Length:473 Identity:96/473 - (20%)
Similarity:172/473 - (36%) Gaps:119/473 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 VLIVGGGLSGLASALKILAMESTLKVRMIEASDALGGLMGQNST----------RLVDAAQQDML 68
            ||:||.|.:|||:|.::  ....:||.::||.|.:||.:..:.:          ::|:....:.:
Mouse   398 VLVVGAGPAGLAAARQL--HNFGMKVTVLEAKDRIGGRVWDDKSFKGVVVGRGPQIVNGCINNPV 460

  Fly    69 ALLTLIHLSPRRRRSISGSLR----RCWDL--DRGLTAMPA-----KFELGRYIDML-DLRMPKF 121
            ||:.         ..:..|:|    || ||  :.|....|.     .|.....:|:: :.|..|.
Mouse   461 ALMC---------EQLGISMRKLGERC-DLIQEGGRITDPTVDKRMDFHFNALLDVVSEWRKDKT 515

  Fly   122 RSKRFNLRERVSNMEQHICHHLFFSKS-----------RNFMLNLVQLVCG-----VPANEVDYD 170
            ..:...|.|::..:     :..|..:|           ..|.|:.::..||     |.|...|::
Mouse   516 LLQDVPLGEKIEEI-----YRAFVKESGIQFSELEGQVLQFHLSNLEYACGSSLHQVSARSWDHN 575

  Fly   171 VFMSVCSSCGGLKVLIDFYFTYPTSFYEISTQMLIENILEQLQFIKIILNCRAVRLEHFKNYVQV 235
            .|.:  ...|...:|...|.|            :||.:.|.|.   |.|......:::..:.|||
Mouse   576 EFFA--QFAGDHTLLTPGYST------------IIEKLAEGLD---IRLKSPVQSIDYTGDEVQV 623

  Fly   236 TDDQGNKHTAQAAILAIPWNKVQK--LHFEPRIPKVFLPRTTSRSGRKGRQVISQFQLRYGKSVW 298
            |...|..|:||..::.:|...:|:  :.|.|.:.:..:....|    .|..:|.:..|::....|
Mouse   624 TTTDGMGHSAQKVLVTVPLAILQRGAIQFNPPLSEKKMKAINS----LGAGIIEKIALQFPYRFW 684

  Fly   299 TDLGYSGNFLSSQPMVSGHECRMSSFCGYVLHLPEDQDEVLQDVV--DLLAEHFGEEMRQPL-EC 360
            .......:|....|..:......:.|    ..:...|..||..|:  :.:|.....:.:|.| :|
Mouse   685 DSKVQGADFFGHVPPSASQRGLFAVF----YDMDSQQQSVLMSVITGEAVASLRTMDDKQVLQQC 745

  Fly   361 QCFTDELNVAQHKPQ----------TKPWHRVIWS------------------------SSSAVG 391
            .....||...|..|:          |:||.::.:|                        :..|..
Mouse   746 MGILRELFKEQEIPEPTKYFVTRWSTEPWIQMAYSFVKTFGSGEAYDIIAEEIQGTVFFAGEATN 810

  Fly   392 TSYRSLMGGAVQSGFRAA 409
            ..:...:.||..||.|.|
Mouse   811 RHFPQTVTGAYLSGVREA 828

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
shpsNP_651239.1 YobN 9..409 CDD:440844 95/471 (20%)
Kdm1bXP_006516976.1 zf-CW 138..198 CDD:462181
PLN02328 <315..831 CDD:215187 96/473 (20%)
Blue background indicates that the domain is not in the aligned region.

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