DRSC/TRiP Functional Genomics Resources

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Protein Alignment shps and Kdm1b

DIOPT Version :9

Sequence 1:NP_651239.1 Gene:shps / 42892 FlyBaseID:FBgn0286199 Length:477 Species:Drosophila melanogaster
Sequence 2:XP_006516976.1 Gene:Kdm1b / 218214 MGIID:2145261 Length:834 Species:Mus musculus


Alignment Length:473 Identity:96/473 - (20%)
Similarity:172/473 - (36%) Gaps:119/473 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 VLIVGGGLSGLASALKILAMESTLKVRMIEASDALGGLMGQNST----------RLVDAAQQDML 68
            ||:||.|.:|||:|.::  ....:||.::||.|.:||.:..:.:          ::|:....:.:
Mouse   398 VLVVGAGPAGLAAARQL--HNFGMKVTVLEAKDRIGGRVWDDKSFKGVVVGRGPQIVNGCINNPV 460

  Fly    69 ALLTLIHLSPRRRRSISGSLR----RCWDL--DRGLTAMPA-----KFELGRYIDML-DLRMPKF 121
            ||:.         ..:..|:|    || ||  :.|....|.     .|.....:|:: :.|..|.
Mouse   461 ALMC---------EQLGISMRKLGERC-DLIQEGGRITDPTVDKRMDFHFNALLDVVSEWRKDKT 515

  Fly   122 RSKRFNLRERVSNMEQHICHHLFFSKS-----------RNFMLNLVQLVCG-----VPANEVDYD 170
            ..:...|.|::..:     :..|..:|           ..|.|:.::..||     |.|...|::
Mouse   516 LLQDVPLGEKIEEI-----YRAFVKESGIQFSELEGQVLQFHLSNLEYACGSSLHQVSARSWDHN 575

  Fly   171 VFMSVCSSCGGLKVLIDFYFTYPTSFYEISTQMLIENILEQLQFIKIILNCRAVRLEHFKNYVQV 235
            .|.:  ...|...:|...|.|            :||.:.|.|.   |.|......:::..:.|||
Mouse   576 EFFA--QFAGDHTLLTPGYST------------IIEKLAEGLD---IRLKSPVQSIDYTGDEVQV 623

  Fly   236 TDDQGNKHTAQAAILAIPWNKVQK--LHFEPRIPKVFLPRTTSRSGRKGRQVISQFQLRYGKSVW 298
            |...|..|:||..::.:|...:|:  :.|.|.:.:..:....|    .|..:|.:..|::....|
Mouse   624 TTTDGMGHSAQKVLVTVPLAILQRGAIQFNPPLSEKKMKAINS----LGAGIIEKIALQFPYRFW 684

  Fly   299 TDLGYSGNFLSSQPMVSGHECRMSSFCGYVLHLPEDQDEVLQDVV--DLLAEHFGEEMRQPL-EC 360
            .......:|....|..:......:.|    ..:...|..||..|:  :.:|.....:.:|.| :|
Mouse   685 DSKVQGADFFGHVPPSASQRGLFAVF----YDMDSQQQSVLMSVITGEAVASLRTMDDKQVLQQC 745

  Fly   361 QCFTDELNVAQHKPQ----------TKPWHRVIWS------------------------SSSAVG 391
            .....||...|..|:          |:||.::.:|                        :..|..
Mouse   746 MGILRELFKEQEIPEPTKYFVTRWSTEPWIQMAYSFVKTFGSGEAYDIIAEEIQGTVFFAGEATN 810

  Fly   392 TSYRSLMGGAVQSGFRAA 409
            ..:...:.||..||.|.|
Mouse   811 RHFPQTVTGAYLSGVREA 828

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
shpsNP_651239.1 NADB_Rossmann 11..>53 CDD:304358 16/38 (42%)
Amino_oxidase 21..409 CDD:279874 90/464 (19%)
Kdm1bXP_006516976.1 zf-CW 138..198 CDD:369393
PLN02328 <315..831 CDD:215187 96/473 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1231
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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