Protein Alignment shps and lsd-1

DIOPT Version :10

• Sequence 1: NP_651239.1
• Gene: shps / 42892
• FlyBaseID: FBgn0286199
• Length: 477
• Species: Drosophila melanogaster
• Sequence 2: NP_510000.2
• Gene: lsd-1 / 181369
• WormBaseID: WBGene00011615
• Length: 737
• Species: Caenorhabditis elegans
• Alignment Length: 581
• Identity: 96/581 - (16%)
• Similarity: 179/581 - (30%)
• Gaps: 235/581 - (40%)

  Fly    14 VLIVGGGLSGLASALKILAMESTLKVRMIEASDALGGLM-------------GQNSTRLVDAAQQ 65
            |:::|.|.:|:|:|.::|..  ...|.::|||...||.:             |.:|.|.:|.:
 Worm   177 VVVIGAGAAGIAAATQLLTF--GFDVAVVEASGLTGGRVRSLISKHGELIETGCDSLRNLDES-- 237

  Fly    66 DMLALLTLIHLSPRRRRSISGS-----------LRRCW-------DLDRGLT----AMPAKFELG 108
               .:.||:|..|.....:|.:           :.||.       :|..||.    ....:.|.|
 Worm   238 ---VITTLLHQVPLNENIMSENTIVFSKGKYVPVARCHVINGLYANLKAGLAHASHGPEQRGENG 299

  Fly   109 RYI----------DMLD----LRMPKFRSKRFNL------------------------------- 128
            .||          :|::    |....|..::.||
 Worm   300 LYISRQQAYENYFNMIERSTLLSYYNFAKEKVNLNAERKHLYEVLKTNRLTALLAEQKLKNTPPS 364

  Fly   129 -----------------------------RERVSNMEQH-----------ICHHLFFSKSRNFML 153
                                         .||::::|::           ..|:       ||:|
 Worm   365 DELLLKSLQIDIEKAIRQFDEACERFEICEERIADLEKNPRCKQSMHPNDFIHY-------NFLL 422

  Fly   154 NLVQLVCGVPANEVDYDVFMSVCSSCGGLKVLIDFYFTYPTSFYEISTQMLIENILEQLQFIKI- 217
            ...:.:.|....:|.:        ||               :..|:..:..:..:.|.|..:.|
 Worm   423 GFEERLFGAQLEKVQF--------SC---------------NVNELKLKSQVARVQEGLAQVLIN 464

  Fly   218 ILNCRAVRLEHFKNYVQVTDDQGNKH----------------TAQAAILAIPWNKVQKL------ 260
            :.|.|.|::.|.:..:::  |.|:..                .|...:..:|...::|.
 Worm   465 VANERKVKIHHNQRVIEI--DTGSSDAVILKLRKPDGSVGILNADYVVSTLPIGVLKKTIIGDER 527

  Fly   261 --HFEPRIPKVFLPRTTSRSGRKGRQVISQFQLRYGKSVWTDLGYSGNFLSSQPMVSGHECRMSS 323
              .|.|.:||.......|.......:::..|:.|:    |.:   |.|..:..|........|.:
 Worm   528 APVFRPPLPKSKFAAIRSLGNGLINKIVFVFETRF----WPE---SINQFAIVPDKISERAAMFT 585

  Fly   324 FCGYVLHLPEDQ-----------------DEVLQDVVDLLAEHFGEEMRQPLEC---QCFTDELN 368
            :..    |||.:                 .|::...:::|...| ::...|::.   ...||||.
 Worm   586 WSS----LPESRTLTTHYVGENRFHDTPVTELITKALEMLKTVF-KDCPSPIDAYVTNWHTDELA 645

  Fly   369 VAQ---HKPQTKPWH---------------RVIWSSSSAVGTSYRSLMGGAVQSGFRAAVN 411
            ...   ...:|:|.|               ||.::........:.:| .||..||.|||.:
 Worm   646 FGTGTFMSLRTEPQHFDALKEPLKTRDGKPRVFFAGEHTSALEHGTL-DGAFNSGLRAAAD 705

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
shps	NP_651239.1	YobN	9..409	CDD:440844	94/577 (16%)
lsd-1	NP_510000.2	SWIRM	80..158	CDD:461307
		Amino_oxidase	191..706	CDD:396255	90/567 (16%)