DRSC/TRiP Functional Genomics Resources

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Protein Alignment shps and amx-1

DIOPT Version :9

Sequence 1:NP_651239.1 Gene:shps / 42892 FlyBaseID:FBgn0286199 Length:477 Species:Drosophila melanogaster
Sequence 2:NP_497772.2 Gene:amx-1 / 175493 WormBaseID:WBGene00000137 Length:824 Species:Caenorhabditis elegans


Alignment Length:522 Identity:96/522 - (18%)
Similarity:172/522 - (32%) Gaps:158/522 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 PFGTQTPELDVLIVGGGLSGLASA--LKILAMESTLKVRMIEASDALGGLM----------GQNS 56
            |.....|:  :.|:|.|:||:::|  ||.|.:::.|    .||.|..||.|          |:.:
 Worm   346 PLNGMRPK--IAIIGAGISGISTARHLKHLGIDAVL----FEAKDRFGGRMMDDQSLGVSVGKGA 404

  Fly    57 TRLVDAAQQDMLALLTLIHLSPRRRR---SISGSLRRCWDLDRG-------------LTAMPAKF 105
            ..:|......:..|...|.:..|...   .:.....||:.|:|.             |.|:..|:
 Worm   405 QIIVGNINNPITLLCEQIGIKYRNSNFFCPLIDENGRCFTLERKELDDQVDLHYNNVLDAIRNKY 469

  Fly   106 ELGRYIDMLDLRMPKFRSKRFNLRERVSNMEQHI-----CHHLF---FSKSRNFMLNLVQLVCGV 162
            :..|....:.|.:..||    :..|..|.|...:     ...|:   |.|..:|.|..::..||.
 Worm   470 QSDRNFPDVPLEVTNFR----HFTEMFSKMSSGLLSAADLDSLYTPEFEKLLDFHLGNLEFSCGT 530

  Fly   163 PANEV---DYDVFMSVCSSCGGLKVLIDFYFTYPTSFYEISTQMLIENILEQLQFIKIILNC--- 221
            ..:.:   |||......:..|...|:.|            ..|.:|:.:...|.   |.|||   
 Worm   531 HVSNLSAKDYDHNEKFGNFAGEHAVITD------------GAQRIIDFLATGLD---IRLNCPVK 580

  Fly   222 --------RAVRLEHFKNYVQVTDDQGNKHTAQAAILAIPWNKVQKLHFEPRIPKVFLPRTTSRS 278
                    |.|:: .|:|..|..::      ....::....:.::..|     .|:|:|......
 Worm   581 CIDWGRDDRKVKI-FFENAEQAAEE------FDKVVITTSLSVLKSNH-----SKMFVPPLPIEK 633

  Fly   279 GRK----GRQVISQFQLRYGKSVWTDLGYSGNFLSSQPMVSGHECR-----MSSFCGYVLHLPED 334
            .:.    |..:|.:..:::.:..|..:...|  |.::......:|:     .:.|..:....|..
 Worm   634 QKAIDDLGAGLIEKIAVKFDRRFWDTVDADG--LRTEYFGKVSDCKTDRSLFNIFYDFSGKDPNG 696

  Fly   335 QDE------VLQDVVDL--------LAEHFGEEMRQPLECQCFTDELNVAQHKPQTKPWHRVIWS 385
            :|.      |..:.|:|        :|:.|...:|:...........::..|           |.
 Worm   697 EDTFVLMSYVTAEHVNLVNVLTESEVADKFCATLRKMFPSAVINPLGHMMSH-----------WG 750

  Fly   386 SSSAVGTSY-----------------RSL------------------MGGAVQSGFRAAVNAVFV 415
            :...||.||                 :|:                  |.||..||.|.|...|..
 Worm   751 ADRFVGMSYTFVPFGSDGDATYNQLKKSIDEKLYFAGEHTIAAEPQTMAGAYISGLREAGQIVMS 815

  Fly   416 VR 417
            ::
 Worm   816 LK 817

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
shpsNP_651239.1 NADB_Rossmann 11..>53 CDD:304358 16/53 (30%)
Amino_oxidase 21..409 CDD:279874 89/495 (18%)
amx-1NP_497772.2 SWIRM 251..337 CDD:282311
NAD_binding_8 356..414 CDD:290186 18/61 (30%)
Amino_oxidase 361..813 CDD:279874 90/499 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160161015
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1231
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.740

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