DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment shps and Il4i1

DIOPT Version :9

Sequence 1:NP_651239.1 Gene:shps / 42892 FlyBaseID:FBgn0286199 Length:477 Species:Drosophila melanogaster
Sequence 2:XP_006229253.1 Gene:Il4i1 / 100360621 RGDID:1304831 Length:648 Species:Rattus norvegicus


Alignment Length:568 Identity:109/568 - (19%)
Similarity:197/568 - (34%) Gaps:188/568 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 TQTPELDVLIVGGGLSGLASALKILAMESTLKVRMIEASDALGG----LMGQNSTRLVDAAQQDM 67
            |..|: .|::||.|::||.:| |:|: ::..||.::||.:.:||    ...:.:..:.:.....|
  Rat    63 TSKPQ-KVVVVGAGVAGLVAA-KVLS-DAGHKVTILEAGNRIGGRIFTFRDEKTGWIGELGAMRM 124

  Fly    68 LALLTLIHLSPRRRRSISGSLRRCWDLDRGLTAMPAKFELGRYIDMLDLRMPKFRSKRFNLRER- 131
            .:...::|   :..||:..:|.:....|..........:|..|:..   :||:......|.||| 
  Rat   125 PSSHRILH---QLCRSLGLNLTQFTQYDENAWTEVKGVKLRNYVVE---KMPEKLGYDLNHRERG 183

  Fly   132 -------------------------VSNM--EQHICHHLFFSKSRNFMLNLVQLVCGVPANEVDY 169
                                     ..||  |..:..:|.  |..|.....|||:..|.:.|..:
  Rat   184 HSPEDIYQMALNKAIKDVKVLGCKKAMNMFSEHTLLEYLL--KEGNLSQPAVQLLGDVMSKEGFF 246

  Fly   170 DVFMSVCSSCGGLKVLID-FYFTYPTSFYEISTQMLIENILEQLQFIKIILNCRAVRLEHFKNYV 233
              ::|:..:......|.| ..::.....:::..:.|:.::..     .::||...|.:...::.|
  Rat   247 --YLSLAEAFRAHACLSDRLRYSRIVGGWDLLPRALLSSLSG-----TVLLNAPVVSISQGRHEV 304

  Fly   234 QV---TDDQGNK---HTAQAAILAIPWNKVQKLHFEPRIPKVFLPRTTSRSGRKGRQVISQFQLR 292
            .|   |..|.:.   .||...:|......:|::.|.|       |.|     ||.::.:.  .|.
  Rat   305 HVHFTTSLQSHSLEVMTADVVLLTASGPALQRISFSP-------PLT-----RKRQEALR--ALH 355

  Fly   293 YGKSVWTDLGYSGNFLSSQPMVSGHE-----CRM----------------------SSFCG---- 326
            |..:....|.:...|...:.::.||.     .|:                      :.|.|    
  Rat   356 YVAASKVFLSFHRPFWHEEHIMGGHSNTDRPSRLIFYPAPGEGSLLLASYTWSDAAAPFAGLSTE 420

  Fly   327 YVLHLPEDQDEVLQDVVDL-------------LAEHFGEE--------MRQPLECQCFTD-ELNV 369
            ..|||      ||:|:..|             :.:.:.|:        ::.||..|...| :.:|
  Rat   421 QTLHL------VLKDLAALHGPVVYRLWDGRGVVKRWAEDPYSQGGFVVQPPLFGQGTEDYDWSV 479

  Fly   370 AQHKPQTKPWHRVIWSSSSAVGTSYRSLMGG----AVQSGFRAAV-------------------- 410
                    |:.|:.::.      .:.:|..|    ||:||.|||:                    
  Rat   480 --------PYGRIYFAG------EHTALPHGWVETAVKSGLRAALRINSNYGYGMVDLETLEHAL 530

  Fly   411 -NAVFV-----------------VRP--QVVSWKDMLVEQPKNGQDVV 438
             .|.|.                 |.|  |.:|.|.:|||...:||..|
  Rat   531 AEASFAEQYLEGDQPEEQQAQEEVNPDRQDLSQKHLLVETGPDGQQHV 578

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
shpsNP_651239.1 NADB_Rossmann 11..>53 CDD:304358 15/45 (33%)
Amino_oxidase 21..409 CDD:279874 88/483 (18%)
Il4i1XP_006229253.1 Amino_oxidase 83..513 CDD:396255 87/479 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166343444
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1231
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.740

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