DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Orct and Sv2b

DIOPT Version :9

Sequence 1:NP_001262908.1 Gene:Orct / 42891 FlyBaseID:FBgn0019952 Length:548 Species:Drosophila melanogaster
Sequence 2:NP_001103223.1 Gene:Sv2b / 64176 MGIID:1927338 Length:683 Species:Mus musculus


Alignment Length:559 Identity:109/559 - (19%)
Similarity:192/559 - (34%) Gaps:184/559 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   123 VCSRSLLSATSDS------------LFMLGVLLGSLIFGQMSDKLGRKPTFFASLVLQLIFGVLA 175
            |.|.:|.||..|.            :..||::.|:.|.|.::||||||.....||.:...|..|:
Mouse   128 VVSFALPSAEKDMCLSSSKKGMLGLIVYLGMMAGAFILGGLADKLGRKKVLSMSLAINASFASLS 192

  Fly   176 AVAPEYFSYTISRMIVGATTSGVFLVAYVIALEMVGSSYR-----------LFAGV-AMQMFFSV 228
            :....|.::...|:|.|....|...:.:....|.:....|           :..|: |..|.:|:
Mouse   193 SFVQGYGAFLFCRLISGIGIGGSLPIVFAYFSEFLSREKRGEHLSWLGIFWMTGGIYASAMAWSI 257

  Fly   229 ----GFMLTAGFAYFIHDWRWLQIAITLPGLLFLCYYWIIPESARWLLMKGRKDEAFVIIEKAAK 289
                |:..:.|..|..|.||...|...||..:.:.....:|||.|:||..|:.|||::|:::...
Mouse   258 IPHYGWGFSMGTNYHFHSWRVFVIVCALPATVSMVALKFMPESPRFLLEMGKHDEAWMILKQVHD 322

  Fly   290 EN--KVEVPNEIYEQLVDEVAEKKKQDEMAASQPAATVFD---LLRYPNL--------------- 334
            .|  ....|.:::  .|..:...|:.||....|.:...:.   |:|:..:               
Mouse   323 TNMRAKGTPEKVF--TVSHIKTPKQMDEFIEIQSSTGTWYQRWLVRFMTIFKQVWDNALYCVMGP 385

  Fly   335 -RRKTLLIFFDWFVNSGVYYGLS-W----------------------------NTNNLGGNQ--- 366
             |..||::...||..:..||||: |                            ..|....||   
Mouse   386 YRMNTLILAVVWFTMALSYYGLTVWFPDMIRYFQDEEYKSKMKVFFGEHVHGATINFTMENQIHQ 450

  Fly   367 ----------------------------------------------------------------- 366
                                                                             
Mouse   451 HGKLVNDKFIKMYFKHVLFEDTFFDKCYFEDVTSTDTYFKNCTIESTTFYNTDLYKHKFINCRFI 515

  Fly   367 ------------------------LVNFMISGAVEIPGYTLLLFTLNRWGRRSILCGTMMVAGIS 407
                                    ||:|:.|.:| :||..:....::|.||..::.|:|:::.:.
Mouse   516 NSTFLEQKEGCHMDFEEDNDFLIYLVSFLGSLSV-LPGNIISALLMDRIGRLKMIGGSMLISAVC 579

  Fly   408 LLATIFVPSD---MNWLIVACAMIGKLAITSSYGTIYIFSAEQFPTVVRNVGLGASSMVARVGGI 469
            .....|..|:   :.|..:.|.     ...:::..:.:.:.|.:||..|....|..:.:.:.|.|
Mouse   580 CFFLFFGNSESAMIGWQCLFCG-----TSIAAWNALDVITVELYPTNQRATAFGILNGLCKFGAI 639

  Fly   470 LAP--YLKLLGEIWRPLPLIICGALSLTAGLLSLLLPET 506
            |..  :...:| |.:.:|:::..|..:..||::|.||||
Mouse   640 LGNTIFASFVG-ITKVVPILLAAASLVGGGLIALRLPET 677

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
OrctNP_001262908.1 2A0119 11..514 CDD:273328 109/559 (19%)
MFS 135..491 CDD:119392 95/530 (18%)
Sv2bNP_001103223.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..73
synapt_SV2 8..683 CDD:130366 109/559 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1933
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.940

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