DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Orct and sv2a

DIOPT Version :9

Sequence 1:NP_001262908.1 Gene:Orct / 42891 FlyBaseID:FBgn0019952 Length:548 Species:Drosophila melanogaster
Sequence 2:XP_696434.2 Gene:sv2a / 568033 ZFINID:ZDB-GENE-131001-1 Length:733 Species:Danio rerio


Alignment Length:535 Identity:97/535 - (18%)
Similarity:186/535 - (34%) Gaps:179/535 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   139 LGVLLGSLIFGQMSDKLGRKPTFFASLVLQLIFGVLAAVAPEYFSYTISRMIVGATTSGVFLVAY 203
            ||:::|:.::|.::|::||:.|...||.:..:|...::....|.|:...|::.|....|...:.:
Zfish   205 LGMMVGAFVWGGLADRIGRRQTLLISLSINSVFAFFSSFVQGYSSFLFCRLLSGVGIGGSIPIVF 269

  Fly   204 -----VIALE-------------MVGSSYRLFAGVAMQMFFSVGFMLTAGFAYFIHDWRWLQIAI 250
                 .:|.|             |:|..|.  |.:|..:....|:....|.||..|.||...:..
Zfish   270 SYYSEFLAQEKRGEHLSWLCMFWMIGGIYA--AAMAWAIIPHYGWSFQMGSAYQFHSWRVFVLVC 332

  Fly   251 TLPGLLFLCYYWIIPESARWLLMKGRKDEAFVIIEKAAKEN--KVEVPNEIYEQLVDEVAEKKKQ 313
            ..|.:..:.....:|||.|:.|..|:.|||::|:::....|  ....|..::.  |..:...|:.
Zfish   333 AFPSVAAIAALTTMPESPRFYLENGKHDEAWMILKQVHDTNMRAKGYPERVFS--VTTIKTVKQM 395

  Fly   314 DEMAASQPAA-----------------------TVFDLLRYPNLRRKTLLIFFDWFVNSGVYYGL 355
            ||:......|                       |||:    |..||.|.::...||..|..||||
Zfish   396 DELVDMGGEATAWHQRWRIKLTNLFHQVWGNFLTVFN----PEYRRITYMMMAVWFSMSFSYYGL 456

  Fly   356 S---------------------------------------------------------------- 356
            :                                                                
Zfish   457 TVWFPDMIKYLQKQEYSSRTKVFIKEKVEHVTFNFTLENQIHRNGEYFNNKFLNLKMKSMVFEDS 521

  Fly   357 ---------------------------WNTN----NLGGNQLVN--------------------- 369
                                       :||:    .|..::|:|                     
Zfish   522 LFEECYFEDITSSNTFFRNCTFISTLFYNTDLFKYRLINSKLINSTFLHNKEGCMLDFSDENNAY 586

  Fly   370 ------FMISGAVEIPGYTLLLFTLNRWGRRSILCGTMMVAGISLLATIFVPSDMNWLIVACAMI 428
                  |:.:.|| :||..:....:::.||..:|.|:.:::.:|.....|..|:...:.:.| :.
Zfish   587 MIYFVSFLGTLAV-LPGNIVSALLMDKIGRLRMLAGSSVISCVSCFFLSFGNSESAMIALLC-LF 649

  Fly   429 GKLAITSSYGTIYIFSAEQFPTVVRNVGLGASSMVARVGGIL--APYLKLLGEIWRPLPLIICGA 491
            |.::| :|:..:.:.:.|.:|:..|....|..:.:.::..:|  :.:...:| |.:.:|::....
Zfish   650 GGISI-ASWNALDVLTVELYPSDKRTTAFGFLNALCKLAAVLGISIFQSFVG-ITKAVPILFASG 712

  Fly   492 LSLTAGLLSLLLPET 506
            .......|:|.||||
Zfish   713 ALAAGSFLALKLPET 727

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
OrctNP_001262908.1 2A0119 11..514 CDD:273328 97/535 (18%)
MFS 135..491 CDD:119392 91/518 (18%)
sv2aXP_696434.2 synapt_SV2 1..733 CDD:130366 97/535 (18%)
MFS 162..725 CDD:119392 93/531 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1933
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.940

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