DRSC/TRiP Functional Genomics Resources

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Protein Alignment Orct and Sv2c

DIOPT Version :10

Sequence 1:NP_524479.1 Gene:Orct / 42891 FlyBaseID:FBgn0019952 Length:548 Species:Drosophila melanogaster
Sequence 2:NP_113781.1 Gene:Sv2c / 29643 RGDID:619718 Length:727 Species:Rattus norvegicus


Alignment Length:566 Identity:116/566 - (20%)
Similarity:201/566 - (35%) Gaps:192/566 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   113 LNSAVTEWNLVCSRSLLSATSDSLFMLGVLLGSLIFGQMSDKLGRKPTFFASLVLQLIFGVLAAV 177
            |.||.|:   :|..:..|....|:..||:::|:..:|.::||:|||.:....:.:...|..|::.
  Rat   176 LPSAETD---LCIPNSGSGWLGSIVYLGMMVGAFFWGGLADKVGRKQSLLICMSVNGFFAFLSSF 237

  Fly   178 APEYFSYTISRMI----VGATTSGVF-LVAYVIALE-------------MVGSSYRLFAGVAMQM 224
            ...|..:.:.|::    :|.....|| ..|.|:|.|             |:|..|.  :.:|..:
  Rat   238 VQGYGFFLLCRLLSGFGIGGAIPTVFSYFAEVLAREKRGEHLSWLCMFWMIGGIYA--SAMAWAI 300

  Fly   225 FFSVGFMLTAGFAYFIHDWRWLQIAITLPGLLFLCYYWIIPESARWLLMKGRKDEAFVII----- 284
            ....|:..:.|.||..|.||...|...||.:..:.....:|||.|:||..|:.|||::|:     
  Rat   301 IPHYGWSFSMGSAYQFHSWRVFVIVCALPCVSSVVALTFMPESPRFLLEVGKHDEAWMILKLIHD 365

  Fly   285 ---------EKAAKENKVEVPNEIYEQLVDEVAEKKK-------------QDEMAASQPAATVFD 327
                     ||....||::.|.:|     ||:.|.:.             :.|:....  .|...
  Rat   366 TNMRARGQPEKVFTVNKIKTPKQI-----DELIEIESDTGTWYRRCFVRIRTELYGIW--LTFMR 423

  Fly   328 LLRYPNLRRKTLLIFFDWFVNSGVYYGLS-W---------------NTNNLGGNQLVNFMISGAV 376
            ...|| :|..|:.:...||..|..||||| |               .|.|:..::..||.|:..:
  Rat   424 CFNYP-VRENTIKLTIVWFTLSFGYYGLSVWFPDVIKHLQSDEYALLTRNVQKDKYANFSINFTM 487

  Fly   377 E---------------------------------------------------------------- 377
            |                                                                
  Rat   488 ENQVHTGMEYDNGRFLGVKFKSVTFKDSVFKSCTFDDVTSVNTYFKNCTFIDTLFENTDFEPYKF 552

  Fly   378 -----------------------------------------IPGYTLLLFTLNRWGRRSILCGTM 401
                                                     :||..:....::|.||.::|.|:|
  Rat   553 IDSEFQNCSFLHNKTGCQITFDDDYSAYWIYFVNFLGTLAVLPGNIVSALLMDRIGRLTMLGGSM 617

  Fly   402 MVAGISLLATIFVPSDMNWLIVACAMIGKLAI-----TSSYGTIYIFSAEQFPTVVRNVGLGASS 461
            :::|||.....|..|:       ..|||.|.:     .|::.::.:.:.|.:||..|..|.|..:
  Rat   618 VLSGISCFFLWFGTSE-------SMMIGMLCLYNGLTISAWNSLDVVTVELYPTDRRATGFGFLN 675

  Fly   462 MVARVGGILAPYL-KLLGEIWRPLPLIICGALSLTAGLLSLLLPET 506
            .:.:...:|...: ..|..|.:.:|:::...:.:..||:.|.||:|
  Rat   676 ALCKAAAVLGNLIFGSLVSITKAIPILLASTVLVCGGLVGLRLPDT 721

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
OrctNP_524479.1 2A0119 11..514 CDD:273328 116/566 (20%)
Sv2cNP_113781.1 synapt_SV2 1..727 CDD:130366 116/566 (20%)
Interaction with SYT1. /evidence=ECO:0000269|PubMed:15866046 1..57
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 22..120
(Microbial infection) C.botulinum neurotoxin type A-binding. /evidence=ECO:0000269|PubMed:16543415, ECO:0000269|PubMed:27294781 529..566 0/36 (0%)
Blue background indicates that the domain is not in the aligned region.

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