DRSC/TRiP Functional Genomics Resources

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Protein Alignment Orct and sv2b

DIOPT Version :9

Sequence 1:NP_001262908.1 Gene:Orct / 42891 FlyBaseID:FBgn0019952 Length:548 Species:Drosophila melanogaster
Sequence 2:XP_002933355.1 Gene:sv2b / 100497731 XenbaseID:XB-GENE-6041859 Length:711 Species:Xenopus tropicalis


Alignment Length:535 Identity:100/535 - (18%)
Similarity:184/535 - (34%) Gaps:180/535 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   139 LGVLLGSLIFGQMSDKLGRKPTFFASLVLQLIFGVLAAVAPEYFSYTISRMIVGATTSGVFLVAY 203
            ||::||:.::|.::||:|||.....||.:...|..:::....|..:...|:|.|....|...:.:
 Frog   184 LGMMLGAFVWGGLADKVGRKKCLIISLTINAAFSFVSSFVQGYGLFLFCRLISGFGIGGSLPIVF 248

  Fly   204 VIALE------------------MVGSSYRLFAGVAMQMFFSVGFMLTAGFAYFIHDWRWLQIAI 250
            ....|                  |:|:.|.  |.:|..:....|:..:.|..|..|.||...:..
 Frog   249 AYFSEFLAREKRGEHLSWLCMFWMIGAVYA--AAMAWSIIPHYGWGFSMGTHYHFHSWRVFVVIC 311

  Fly   251 TLPGLLFLCYYWIIPESARWLLMKGRKDEAFVIIEKAAKEN---KVEVPNEIYEQLVDEVAEKKK 312
            .||.:..:.....:|||.|:||..|:.|||::|::.....|   |.| |.:::  .|..:...|:
 Frog   312 VLPCIASIIALKFMPESPRFLLETGKHDEAWMILKNIHDTNMRAKGE-PEKVF--TVSHIKTPKQ 373

  Fly   313 QDEMAASQPAA------------TVFDLLRYPNL--------RRKTLLIFFDWFVNSGVYYGLS- 356
            .||....|.:.            ||...: :.|:        |:.|:.:...||..|..||||: 
 Frog   374 PDEFIEIQSSTGTWFQRWFVRIMTVIKQI-WENMLHCFSGQFRKNTIFLAVVWFTMSLSYYGLTV 437

  Fly   357 W-----------------------NTNNLGGN--------------------------------- 365
            |                       |..|...|                                 
 Frog   438 WFPDTIRYLQDEDYASKVKRFTDENVKNFNFNFTLENQIHEDGEYYNDRFYKMKLKYVTFKDSLF 502

  Fly   366 ----------------------------------------------------------------Q 366
                                                                            .
 Frog   503 DECYFEDVTSTGSIFENCTIQNTVFYNTDLYQHKFIDCNFINVTFSQPKEGCHIDFEEDNDFLIY 567

  Fly   367 LVNFMISGAVEIPGYTLLLFTLNRWGRRSILCGTMMVAGISLLATIFVPSD---MNWLIVACAMI 428
            ||:|:.|.:| :||..:....:::.||..::.|:|:::.:......|..|:   :.|..:.|.  
 Frog   568 LVSFLGSLSV-LPGNIISALLMDKIGRIRMIAGSMLISAVCCFFLFFGNSESAMIGWQCLFCG-- 629

  Fly   429 GKLAITSSYGTIYIFSAEQFPTVVRNVGLGASSMVARVGGIL--APYLKLLGEIWRPLPLIICGA 491
               ...:::..:.:.:.|.:||..|....|..:.:.::..|.  :.:...:| |.:.:|:::...
 Frog   630 ---TSIAAWNALDVVTVELYPTNKRATAFGILNGLCKLAAIFGNSIFASFVG-ITKVIPILLAST 690

  Fly   492 LSLTAGLLSLLLPET 506
            ..:..||:||.||||
 Frog   691 ALVGGGLISLRLPET 705

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
OrctNP_001262908.1 2A0119 11..514 CDD:273328 100/535 (19%)
MFS 135..491 CDD:119392 92/518 (18%)
sv2bXP_002933355.1 synapt_SV2 1..711 CDD:130366 100/535 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1933
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.940

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