DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Orct and sv2c

DIOPT Version :9

Sequence 1:NP_001262908.1 Gene:Orct / 42891 FlyBaseID:FBgn0019952 Length:548 Species:Drosophila melanogaster
Sequence 2:XP_002934873.1 Gene:sv2c / 100490137 XenbaseID:XB-GENE-960877 Length:725 Species:Xenopus tropicalis


Alignment Length:567 Identity:113/567 - (19%)
Similarity:205/567 - (36%) Gaps:188/567 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   113 LNSAVTEWNLVCSRSLLSATSDSLFMLGVLLGSLIFGQMSDKLGRKPTFFASLVLQLIFGVLAAV 177
            |.||.|:   :|.....|....|:..||:::|:..:|.::||:|||.:....:.:...|..|::.
 Frog   174 LPSAETD---MCIPDSGSGWLGSIVYLGMMVGAFFWGGLADKVGRKQSLLICMSVNGFFAFLSSF 235

  Fly   178 APEYFSYTISRMIVGATTSGVFLVAY-----VIALE-------------MVGSSYRLFAGVAMQM 224
            ...|..:.:.|::.|....|....|:     |:|.|             |:|..|.  :.:|..:
 Frog   236 VQGYGLFLVCRLLSGFGIGGALPTAFSYFSEVLAREKRGEHLSWLCMFWMIGGIYA--SAMAWAI 298

  Fly   225 FFSVGFMLTAGFAYFIHDWRWLQIAITLPGLLFLCYYWIIPESARWLLMKGRKDEAFVIIEKAAK 289
            ....|:..:.|.||..|.||...|...||.:..:.....:|||.|:||..|:.|||::|:::...
 Frog   299 IPHYGWSFSMGSAYQFHSWRVFVIVCALPCVSAVVALTFMPESPRFLLETGKHDEAWMILKQIHD 363

  Fly   290 EN---KVEVPNEIYEQLVDEVAEKKKQDEMAASQPAA--------------------TVFDLLRY 331
            .|   :.| |.:::  .|..:...|:.||:...:...                    |......|
 Frog   364 TNMRARGE-PEKVF--TVQRIKTPKQIDELIEIESDTGTWYKRCFVRIRTEFYGIWLTFMRCFEY 425

  Fly   332 PNLRRKTLLIFFDWFVNSGVYYGLS-W--------------------NTNNLGG--------NQL 367
            | ::..|:.:...|...|..||||| |                    |.:.:..        ||:
 Frog   426 P-VKDNTIKLTIVWLTLSFGYYGLSVWFSDVIKHLQADEYASRVKRFNGSTIADYKFNYTLENQI 489

  Fly   368 ----------------------------------------------------------------- 367
                                                                             
 Frog   490 HKNAVFINDRFISMKFKSVVFQDSLFERCYFEDVTSINTYFRNCTLIDTHFVNTDLEKYKFTDSQ 554

  Fly   368 ----------------------------VNFMISGAVEIPGYTLLLFTLNRWGRRSILCGTMMVA 404
                                        |||:.:.|| :||..:....:::.||.::|.|:|:::
 Frog   555 TINCTFTIPKIGCQITFDDDYSAYWIYFVNFLGTLAV-LPGNIVSALLMDKIGRLTMLGGSMVLS 618

  Fly   405 GISLLATIFVPSDMNWLIVACAMIGKLAI-----TSSYGTIYIFSAEQFPTVVRNVGLGASSMVA 464
            |||.....|..|:       ..|:|.|.:     .|::.::.:.:.|.:||..|..|.|..:.:.
 Frog   619 GISCFLLWFGTSE-------SMMVGMLCVYNGLTISAWNSLDVVTVELYPTDKRATGFGFLNALC 676

  Fly   465 RVGGILAPYL--KLLGEIWRPLPLIICGALSLTAGLLSLLLPETLNK 509
            :...:|...:  .|:| |.:.:|:::..|:.:..||:.|.||:|.|:
 Frog   677 KGAAVLGNLIFGSLVG-ITKAIPILLASAVLVGGGLVGLRLPDTRNQ 722

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
OrctNP_001262908.1 2A0119 11..514 CDD:273328 113/567 (20%)
MFS 135..491 CDD:119392 99/525 (19%)
sv2cXP_002934873.1 synapt_SV2 1..725 CDD:130366 113/567 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1933
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
22.030

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