DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Orct and sv2ba

DIOPT Version :9

Sequence 1:NP_001262908.1 Gene:Orct / 42891 FlyBaseID:FBgn0019952 Length:548 Species:Drosophila melanogaster
Sequence 2:NP_001076464.1 Gene:sv2ba / 100009626 ZFINID:ZDB-GENE-070209-134 Length:689 Species:Danio rerio


Alignment Length:561 Identity:109/561 - (19%)
Similarity:189/561 - (33%) Gaps:186/561 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   123 VCSRSLLSATSDS------------LFMLGVLLGSLIFGQMSDKLGRKPTFFASLVLQLIFGVLA 175
            |.|.:|.||..|.            :..:|:::|::::|.::||||||.....:|.:..||..|:
Zfish   132 VVSFALPSAEKDMCLSNADKGMLGLIVYVGMMIGAVVWGGLADKLGRKQCLLYALAINCIFSFLS 196

  Fly   176 AVAPEYFSYTISRMIVGATTSGVFLVAYVIALE------------------MVGSSYRLFAGVAM 222
            ..|..|..:...|:..|....|...|.|....|                  |:|..|..|....:
Zfish   197 CFAQGYGFFIFFRLCSGIGIGGSIPVVYTYYAEFLQMDKRGEHLSWLCLFWMLGGLYASFTAWGI 261

  Fly   223 QMFFSVGFMLTAGFAYFIHDWRWLQIAITLPGLLFLCYYWIIPESARWLLMKGRKDEAFVIIEKA 287
            ...:..||.:...|.:  |.||...:...||.:..|.....:|||.|:||...|.|||::|:.:.
Zfish   262 IPHYGWGFSMGTEFQF--HSWRVFVLVCFLPSVAALAGLVFMPESPRFLLESARHDEAWMILRRV 324

  Fly   288 AKEN---KVEVPNEIYEQLVDEVAEKKKQDE--MAASQPAATVFD------------------LL 329
            ...|   |.| |..:::  |.::...:.||:  :.......|.|.                  .|
Zfish   325 HDTNWGAKGE-PERVFQ--VSQIKTPQTQDDEFIEIQSETGTAFQRFMVRQMTLVKQVMKNMLSL 386

  Fly   330 RYPNLRRKTLLIFFDWFVNSGVYYGL-SW------------------------------------ 357
            ..|::|...|.|...||..:..|||| :|                                    
Zfish   387 AAPDVRLHGLFIAIVWFTMAFSYYGLGTWFPDQIKYLQFEEYESNVKIFHRERVERFHFNFTLQN 451

  Fly   358 ------------------------------------------------------NTNNLGGNQLV 368
                                                                  ||:....::.:
Zfish   452 QLHKEGEYVHDRFINIEIRNVKFEDSLFENCYFEDIKSTETFFENCTLKNTVFYNTDLWEDSKFI 516

  Fly   369 N-------------------------------FMISGAVEIPGYTLLLFTLNRWGRRSILCGTMM 402
            |                               |:.|.:| |||..|....:::.||..|:.|:|:
Zfish   517 NCNLENTTFLHPKKGCHLNFQEENDILIYLDSFLGSLSV-IPGNILAGLLMDKIGRLKIIGGSML 580

  Fly   403 VAGISLLATIFVPSDMNWLIVACAMIGKLAITSSYGTIYIFSAEQFPTVVRNVGLGASSMVARVG 467
            .:.:.....:...|  .|.:|....:...|..:::..|.:.:.|.:|...|....|..:...::.
Zfish   581 GSAVCTFFLLLCFS--QWAVVLFQCLFFAAGAAAWNGIEVVTVELYPASKRATAFGVLNGTCKLA 643

  Fly   468 GILAPYL--KLLGEIWRPLPLIICGALSLTAGLLSLLLPET 506
            .|::.::  |.:| |.:.:|:|:..:..:..|||:..||||
Zfish   644 AIISSFIFGKFIG-ITKIIPIILSFSALVCGGLLAFKLPET 683

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
OrctNP_001262908.1 2A0119 11..514 CDD:273328 109/561 (19%)
MFS 135..491 CDD:119392 96/532 (18%)
sv2baNP_001076464.1 synapt_SV2 36..689 CDD:130366 109/561 (19%)
MFS 116..678 CDD:119392 105/554 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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