DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Orct2 and Sv2b

DIOPT Version :9

Sequence 1:NP_001262907.1 Gene:Orct2 / 42890 FlyBaseID:FBgn0086365 Length:567 Species:Drosophila melanogaster
Sequence 2:NP_001103223.1 Gene:Sv2b / 64176 MGIID:1927338 Length:683 Species:Mus musculus


Alignment Length:555 Identity:114/555 - (20%)
Similarity:184/555 - (33%) Gaps:202/555 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   139 LGVLLGSIVFGQLSDKYGRKPILFASLVIQVLFGVLAGVAPEYFTYTFARLMVGATTSGVFLVAY 203
            ||::.|:.:.|.|:||.|||.:|..||.|...|..|:.....|..:.|.||:.|....|...:.:
Mouse   156 LGMMAGAFILGGLADKLGRKKVLSMSLAINASFASLSSFVQGYGAFLFCRLISGIGIGGSLPIVF 220

  Fly   204 VVAMEMVGPDKR----LYAGIFVM--------MFFSV------GFMLTAVFAYFVHDWRWLQIAL 250
            ....|.:..:||    .:.|||.|        |.:|:      ||.:..  .|..|.||...|..
Mouse   221 AYFSEFLSREKRGEHLSWLGIFWMTGGIYASAMAWSIIPHYGWGFSMGT--NYHFHSWRVFVIVC 283

  Fly   251 TLPGLIFMFYYWIIPESARWLLLKGRKDCA--------IANMQKAARFNKV-EISDEALSELLDE 306
            .||..:.|.....:|||.|:||..|:.|.|        ..||:......|| .:|.....:.:||
Mouse   284 ALPATVSMVALKFMPESPRFLLEMGKHDEAWMILKQVHDTNMRAKGTPEKVFTVSHIKTPKQMDE 348

  Fly   307 GENSEEKA---------------KQKLEDQELDEGPPPSVWD--LFCYPN-LRRKTLLIFLDWLV 353
            ....:...               ||              |||  |:|... .|..||::.:.|..
Mouse   349 FIEIQSSTGTWYQRWLVRFMTIFKQ--------------VWDNALYCVMGPYRMNTLILAVVWFT 399

  Fly   354 TSGVYYGLS-WNTSNL----------------GGNV---LLNFVISGAVE----------IPAYI 388
            .:..||||: |....:                |.:|   .:||.:...:.          |..|.
Mouse   400 MALSYYGLTVWFPDMIRYFQDEEYKSKMKVFFGEHVHGATINFTMENQIHQHGKLVNDKFIKMYF 464

  Fly   389 ----------------------------------------------------------------- 388
                                                                             
Mouse   465 KHVLFEDTFFDKCYFEDVTSTDTYFKNCTIESTTFYNTDLYKHKFINCRFINSTFLEQKEGCHMD 529

  Fly   389 ------FLLLTLNRWGRRSILCGCLV------------MAGLSLLATVIIPQRMHTLIVAC---- 431
                  ||:..::..|..|:|.|.::            |.|.|:|.:.          |.|    
Mouse   530 FEEDNDFLIYLVSFLGSLSVLPGNIISALLMDRIGRLKMIGGSMLISA----------VCCFFLF 584

  Fly   432 ------AMLGKLAI-----TASYGTVYIFSAEQFPTVVRNVALGAASMVARISGMMAP--FLNFL 483
                  ||:|...:     .|::..:.:.:.|.:||..|..|.|..:.:.:...::..  |.:|:
Mouse   585 FGNSESAMIGWQCLFCGTSIAAWNALDVITVELYPTNQRATAFGILNGLCKFGAILGNTIFASFV 649

  Fly   484 ATIWKPLPLLICGSLTLVAGLLSLLLPETHNKPML 518
            . |.|.:|:|:..:..:..||::|.||||..:.::
Mouse   650 G-ITKVVPILLAAASLVGGGLIALRLPETREQVLM 683

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Orct2NP_001262907.1 2A0119 11..520 CDD:273328 114/555 (21%)
MFS 127..503 CDD:119392 107/538 (20%)
Sv2bNP_001103223.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..73
synapt_SV2 8..683 CDD:130366 114/553 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1933
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.940

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