DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Orct2 and Sv2a

DIOPT Version :9

Sequence 1:NP_001262907.1 Gene:Orct2 / 42890 FlyBaseID:FBgn0086365 Length:567 Species:Drosophila melanogaster
Sequence 2:NP_071313.1 Gene:Sv2a / 64051 MGIID:1927139 Length:742 Species:Mus musculus


Alignment Length:585 Identity:112/585 - (19%)
Similarity:189/585 - (32%) Gaps:198/585 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   119 EWNL--VCGRDFMA-------------------ATSDS-------LFMLGVLLGSIVFGQLSDKY 155
            :|.|  |.|...||                   ..|||       :..||:::|:.::|.|:|:.
Mouse   165 QWTLYFVLGLALMADGVEVFVVGFVLPSAEKDMCLSDSNKGMLGLIVYLGMMVGAFLWGGLADRL 229

  Fly   156 GRKPILFASLVIQVLFGVLAGVAPEYFTYTFARLMVGATTSGVFLVAYVVAMEMVGPDKRLYAGI 220
            ||:..|..||.:..:|...:.....|.|:.|.||:.|....|...:.:....|.:..:||.....
Mouse   230 GRRQCLLISLSVNSVFAFFSSFVQGYGTFLFCRLLSGVGIGGSIPIVFSYFSEFLAQEKRGEHLS 294

  Fly   221 FVMMFFSVGFMLTAVF----------------AYFVHDWRWLQIALTLPGLIFMFYYWIIPESAR 269
            ::.||:.:|.:..|..                ||..|.||...:....|.:..:......|||.|
Mouse   295 WLCMFWMIGGVYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVLVCAFPSVFAIGALTTQPESPR 359

  Fly   270 WLLLKGRKDCA--------IANMQ---------KAARFNKVEISDEALSELLDEGENSEEKAKQK 317
            :.|..|:.|.|        ..||:         .......:...||.:....|.|     ...|:
Mouse   360 FFLENGKHDEAWMVLKQVHDTNMRAKGHPERVFSVTHIKTIHQEDELIEIQSDTG-----TWYQR 419

  Fly   318 LEDQELDEGPPPSVWDLF--CY-PNLRRKTLLIFLDWLVTSGVYYGLS-W--------------- 363
            ...:.|..|  ..||..|  |: |..||.||::...|...|..||||: |               
Mouse   420 WGVRALSLG--GQVWGNFLSCFSPEYRRITLMMMGVWFTMSFSYYGLTVWFPDMIRHLQAVDYAA 482

  Fly   364 --------------------NTSNLGGN------------------------------------- 371
                                |..:.||.                                     
Mouse   483 RTKVFPGERVEHVTFNFTLENQIHRGGQYFNDKFIGLRLKSVSFEDSLFEECYFEDVTSSNTFFR 547

  Fly   372 --VLLNFV-------------------------------ISGAVE----------------IPAY 387
              ..:|.|                               ::|..|                :|..
Mouse   548 NCTFINTVFYNTDLFEYKFVNSRLVNSTFLHNKEGCPLDVTGTGEGAYMVYFVSFLGTLAVLPGN 612

  Fly   388 IFLLLTLNRWGRRSILCGCLVMAGLSLLATVIIPQRMHTLIVACAMLGKLAITASYGTVYIFSAE 452
            |...|.:::.||..:|.|..|::.:|.. .:........:|....:.|.::| ||:..:.:.:.|
Mouse   613 IVSALLMDKIGRLRMLAGSSVLSCVSCF-FLSFGNSESAMIALLCLFGGVSI-ASWNALDVLTVE 675

  Fly   453 QFPTVVRNVALGAASMVARISGMM--APFLNFLATIWKPLPLLICGSLTLVAGLLSLLLPETHNK 515
            .:|:..|..|.|..:.:.:::.::  :.|.:|:. |.|..|:|...:...:...|:|.||||..:
Mouse   676 LYPSDKRTTAFGFLNALCKLAAVLGISIFTSFVG-ITKAAPILFASAALALGSSLALKLPETRGQ 739

  Fly   516  515
            Mouse   740  739

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Orct2NP_001262907.1 2A0119 11..520 CDD:273328 112/585 (19%)
MFS 127..503 CDD:119392 102/561 (18%)
Sv2aNP_071313.1 synapt_SV2 1..742 CDD:130366 112/585 (19%)
Interaction with SYT1. /evidence=ECO:0000250 1..57
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 40..145
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1933
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.940

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