DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Orct2 and LOC303140

DIOPT Version :9

Sequence 1:NP_001262907.1 Gene:Orct2 / 42890 FlyBaseID:FBgn0086365 Length:567 Species:Drosophila melanogaster
Sequence 2:XP_008765965.1 Gene:LOC303140 / 303140 RGDID:1561735 Length:555 Species:Rattus norvegicus


Alignment Length:581 Identity:190/581 - (32%)
Similarity:304/581 - (52%) Gaps:69/581 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 YDEAIIHLGDFGRYQKIIYFLICLTSIPVAFHKLAGVFLLAKPDFRCALPFENGSSYDLPTHLWN 67
            |||....||::|.:|::|:||:..:.||..|..|:.|||.|.|:.||.:|    .:.:|.:...|
  Rat     4 YDELTAFLGEWGPFQRLIFFLLSASIIPNGFTGLSAVFLTASPEHRCLVP----DTVNLSSAWRN 64

  Fly    68 LSYPEN--------ERCSYY-----------------DVDYTEEYLNGSIPRSSNETKTC-SSYV 106
            .|.|..        .:|..|                 |||..:           .|.:.| ..:.
  Rat    65 HSIPLEMKDGRQVPHKCRRYRLATIANFSALGLEPGEDVDLKQ-----------LELENCLDGWE 118

  Fly   107 YDRSKYLNSAVTEWNLVCGRDFMAATSDSLFMLGVLLGSIVFGQLSDKYGRKPILFASLVIQVLF 171
            |.:..:|::.||||||||...:.|..:.|:|.:||||||.:.|||||::||||:||.::.:...|
  Rat   119 YSKEVFLSTIVTEWNLVCNDAWKAPLTTSMFYVGVLLGSFISGQLSDRFGRKPVLFWTMGMHTGF 183

  Fly   172 GVLA--GVAPEYFTYTFARLMVGATTSGVFLVAYVVAMEMVGPDKR-LYAGIFVMMFFSVGFMLT 233
            ..|.  .|..|.||..||  :||......::.|:|:..|::....| ::|.:.:.:||:.|||:.
  Rat   184 SFLQVFSVNFEMFTLLFA--LVGMGHISNYVAAFVLGTEILSKSIRIIFATLGICIFFAFGFMVL 246

  Fly   234 AVFAYFVHDWRWLQIALTLPGLIFMFYYWIIPESARWLLLKGRKDCAIANMQKAARFNKVEISDE 298
            .:||||:.|||.|.:|:||||::....:|.||||.|||:.:||...|...::|||:||.:    .
  Rat   247 PLFAYFIRDWRMLLMAITLPGVLCGALWWFIPESPRWLISQGRVKEAEVIIRKAAKFNGI----V 307

  Fly   299 ALSELLDEGENSEEKAKQKLEDQELDEGPPPSVWDLFCYPNLRRKTLLIFLDWLVTSGVYYGLSW 363
            |.|.:.|..|.:      .|:|..........::||....|:|..|::..:.||..|..|:|||.
  Rat   308 APSTIFDPSETT------NLQDGNAKNTQSHHIYDLVRTRNIRILTIMSIILWLTISVGYFGLSL 366

  Fly   364 NTSNLGGNVLLNFVISGAVEIPAYIFLLLTLNRWGRRSILCGCLVMAGLSLLATVIIPQRMHTLI 428
            :|.||.||:.:|..:..|||:|||:...|.|....||..:.|.|.:.|..||...::|..:..|.
  Rat   367 DTPNLNGNIYVNGFLLAAVEVPAYVLAWLLLQHVTRRYSMAGSLFLGGSVLLILQLVPSDLLYLS 431

  Fly   429 VACAMLGKLAITASYGTVYIFSAEQFPTVVRNVALGAASMVARISGMMAPFLNFLATIWKPLPLL 493
            .|..|:||..||::|..||:::||.:||||||:.:|.:|..:|:..:::|:..:|....:.||.:
  Rat   432 TALVMVGKFGITSAYSMVYVYTAELYPTVVRNMGVGVSSTASRLGSILSPYFVYLGAYDRHLPYI 496

  Fly   494 ICGSLTLVAGLLSLLLPETHNKPMLETIADGERFGKKTKADVYLETGQELRAPEAQPLKGS 554
            :.||||::..:::...||:....:.:||.:             ::..:.:|...|...|||
  Rat   497 VMGSLTILTAIITFFFPESSGVSLPDTIDE-------------MQKVKRIRRVSAMSKKGS 544

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Orct2NP_001262907.1 2A0119 11..520 CDD:273328 179/537 (33%)
MFS 127..503 CDD:119392 138/378 (37%)
LOC303140XP_008765965.1 2A0119 12..523 CDD:273328 179/537 (33%)
MFS 123..513 CDD:119392 147/401 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D386678at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

Return to query results.
Submit another query.