DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Orct2 and Sv2c

DIOPT Version :10

Sequence 1:NP_651238.2 Gene:Orct2 / 42890 FlyBaseID:FBgn0086365 Length:567 Species:Drosophila melanogaster
Sequence 2:NP_113781.1 Gene:Sv2c / 29643 RGDID:619718 Length:727 Species:Rattus norvegicus


Alignment Length:677 Identity:122/677 - (18%)
Similarity:222/677 - (32%) Gaps:251/677 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 EAIIHLGDFGRYQKIIYFLICLTSIPVAFHKLAGVFLLAKPDFRCALPFENGSSYDLPTHLWNLS 69
            |.||.....||:|..::|::             |:.|:|                          
  Rat   139 ELIIQECGHGRFQWALFFVL-------------GMALMA-------------------------- 164

  Fly    70 YPENERCSYYDVDYTEEYLNGSIPRSSNETKTCSSYVYDRSKYLNSAVTEWNLVCGRDFMAATSD 134
                        |..|.::.|.:..|: ||..|          :.::.:.|            ..
  Rat   165 ------------DGVEVFVVGFVLPSA-ETDLC----------IPNSGSGW------------LG 194

  Fly   135 SLFMLGVLLGSIVFGQLSDKYGRKPILFASLVIQVLFGVLAGVAPEYFTYTFARLMVGATTSGVF 199
            |:..||:::|:..:|.|:||.|||..|...:.:...|..|:.....|..:...||:.|....|..
  Rat   195 SIVYLGMMVGAFFWGGLADKVGRKQSLLICMSVNGFFAFLSSFVQGYGFFLLCRLLSGFGIGGAI 259

  Fly   200 LVAYVVAMEMVGPDKRLYAGIFVMMFFSVGFMLTAVF----------------AYFVHDWRWLQI 248
            ...:....|::..:||.....::.||:.:|.:..:..                ||..|.||...|
  Rat   260 PTVFSYFAEVLAREKRGEHLSWLCMFWMIGGIYASAMAWAIIPHYGWSFSMGSAYQFHSWRVFVI 324

  Fly   249 ALTLPGLIFMFYYWIIPESARWLLLKGRKDCA--------IANM------QKAARFNKVEISDEA 299
            ...||.:..:.....:|||.|:||..|:.|.|        ..||      :|....||:: :.:.
  Rat   325 VCALPCVSSVVALTFMPESPRFLLEVGKHDEAWMILKLIHDTNMRARGQPEKVFTVNKIK-TPKQ 388

  Fly   300 LSELLD-EGENSE------EKAKQKLEDQELDEGPPPSVWDLF--C--YPNLRRKTLLIFLDWLV 353
            :.||:: |.:...      .:.:.:|.          .:|..|  |  || :|..|:.:.:.|..
  Rat   389 IDELIEIESDTGTWYRRCFVRIRTELY----------GIWLTFMRCFNYP-VRENTIKLTIVWFT 442

  Fly   354 TSGVYYGLS-W---------------NTSNLGGNVLLNFVISGAVE------------------- 383
            .|..||||| |               .|.|:..:...||.|:..:|                   
  Rat   443 LSFGYYGLSVWFPDVIKHLQSDEYALLTRNVQKDKYANFSINFTMENQVHTGMEYDNGRFLGVKF 507

  Fly   384 ----------------------------------------------------------------- 383
                                                                             
  Rat   508 KSVTFKDSVFKSCTFDDVTSVNTYFKNCTFIDTLFENTDFEPYKFIDSEFQNCSFLHNKTGCQIT 572

  Fly   384 ---------------------IPAYIFLLLTLNRWGRRSILCGCLVMAGLSLLATVIIPQRMHTL 427
                                 :|..|...|.::|.||.::|.|.:|::|:|.............:
  Rat   573 FDDDYSAYWIYFVNFLGTLAVLPGNIVSALLMDRIGRLTMLGGSMVLSGISCFFLWFGTSESMMI 637

  Fly   428 IVACAMLGKLAITASYGTVYIFSAEQFPTVVRNVALGAASMVARISGMMAPFL-NFLATIWKPLP 491
            .:.|...| |.|:| :.::.:.:.|.:||..|....|..:.:.:.:.::...: ..|.:|.|.:|
  Rat   638 GMLCLYNG-LTISA-WNSLDVVTVELYPTDRRATGFGFLNALCKAAAVLGNLIFGSLVSITKAIP 700

  Fly   492 LLICGSLTLVAGLLSLLLPETHNKPML 518
            :|:..::.:..||:.|.||:|..:.::
  Rat   701 ILLASTVLVCGGLVGLRLPDTRTQVLM 727

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Orct2NP_651238.2 2A0119 11..520 CDD:273328 119/671 (18%)
Sv2cNP_113781.1 synapt_SV2 1..727 CDD:130366 122/675 (18%)
Interaction with SYT1. /evidence=ECO:0000269|PubMed:15866046 1..57
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 22..120
(Microbial infection) C.botulinum neurotoxin type A-binding. /evidence=ECO:0000269|PubMed:16543415, ECO:0000269|PubMed:27294781 529..566 0/36 (0%)
Blue background indicates that the domain is not in the aligned region.

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