DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Orct2 and str-176

DIOPT Version :9

Sequence 1:NP_001262907.1 Gene:Orct2 / 42890 FlyBaseID:FBgn0086365 Length:567 Species:Drosophila melanogaster
Sequence 2:NP_001294210.1 Gene:str-176 / 13197055 WormBaseID:WBGene00006220 Length:540 Species:Caenorhabditis elegans


Alignment Length:487 Identity:127/487 - (26%)
Similarity:205/487 - (42%) Gaps:87/487 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    88 LNG--SIPRSSNETKTCSSYVYDRSKYLNSAVTEWNLVCGRDFMAATSDSLFMLGVLLGSIVFGQ 150
            |||  .:....|||..|..   |......|...|:|.:|........:.::...|||:|:.:|||
 Worm    98 LNGCHELAAFRNETNLCEP---DLRYQFKSVQVEFNYICEDAKKVKNTITVQTFGVLVGAAIFGQ 159

  Fly   151 LSDKYGRKPILFASLVIQVLFGVLAGVAPEYFTYTFARLMVGATTSGVFLVAYVVAMEMVGPDKR 215
            :||.:||:..|..|.:...||..:...:|:.|.:...|.:.|..|.||.:|..|..:|.:....|
 Worm   160 VSDTFGRRKALLISTLGNGLFNWITAYSPDLFYFMVWRTLAGVFTGGVTVVQMVFMVENIPRKDR 224

  Fly   216 LYAGIFVMMFFSVGFMLTAVFAYFVHDWRWLQIALTLPGLIFMFYYWIIPESARWLLLKGRKDCA 280
            ::  |...:.:|...:|....|:...|||.:.:.:....:.......|:.||.|||:.|||.:.|
 Worm   225 MW--IQNSITWSPNLILFPFVAWLCQDWRTMSVVIAASSIATFLACLILEESPRWLIQKGRIEEA 287

  Fly   281 IANMQKAARFNKVEISDEALSELLDE--------GENSEEKAKQKLEDQELDEGPPPSVWDLFCY 337
            ..::.:..:.:|  :.||...:.|||        ...|.:|||:.            :...|||.
 Worm   288 RKSLIRIRKTDK--LYDETFEKQLDEVLHVEAEKHARSSKKAKKY------------TFIHLFCT 338

  Fly   338 PNLRRKTLLIFLDWLVTSGVYYGLSWNTSNLGGNVLLNFVISG--------AVEIPAYIFLLLTL 394
            ..:..::|........|:.:.|.|.:|...|.|::..|..|.|        ||.|..|     .|
 Worm   339 WKMIAQSLTFITGITCTTFIVYSLMYNMEKLSGSLYWNLAIMGASRWIINIAVSIADY-----KL 398

  Fly   395 NRWGRRSI-----LCGCLVMAGLSLLATVIIPQRMH----------TLIVACAMLGKLAITASYG 444
            ..:||:.|     :|        :|.|.::|...::          ..:.|.:|..:|.|..   
 Worm   399 PWFGRKMINQIAMIC--------TLFALLMIAVYLYFGYNGQLIAIGTVAAVSMCSQLFIAK--- 452

  Fly   445 TVYIFSAEQFPTVVRNVALGAASMVARISGMMAPFLNFLATI--WKPLPLLI-CGSLTLVAGLLS 506
              |:...|.:||.|||:|:.|.|.::||..|.:|.|.:|:..  |.|..:|. |.....:  :||
 Worm   453 --YMMVNELYPTAVRNLAVSAVSTMSRIGSMFSPQLFYLSDYAEWIPYAVLFSCQLYDFI--VLS 513

  Fly   507 LLLPET-------HNKPMLETIADGERFGKKT 531
            |.||||       |..|..:.|     |||::
 Worm   514 LFLPETKGVILENHLPPKHKRI-----FGKRS 540

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Orct2NP_001262907.1 2A0119 11..520 CDD:273328 123/474 (26%)
MFS 127..503 CDD:119392 102/409 (25%)
str-176NP_001294210.1 2A0119 13..527 CDD:273328 121/467 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160162898
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG48025
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000012
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24064
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X24
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
65.950

Return to query results.
Submit another query.