DRSC/TRiP Functional Genomics Resources

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Protein Alignment Orct2 and sv2b

DIOPT Version :9

Sequence 1:NP_001262907.1 Gene:Orct2 / 42890 FlyBaseID:FBgn0086365 Length:567 Species:Drosophila melanogaster
Sequence 2:XP_002933355.1 Gene:sv2b / 100497731 XenbaseID:XB-GENE-6041859 Length:711 Species:Xenopus tropicalis


Alignment Length:538 Identity:111/538 - (20%)
Similarity:180/538 - (33%) Gaps:180/538 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   139 LGVLLGSIVFGQLSDKYGRKPILFASLVIQVLFGVLAGVAPEYFTYTFARLMVGATTSGVFLVAY 203
            ||::||:.|:|.|:||.|||..|..||.|...|..::.....|..:.|.||:.|....|...:.:
 Frog   184 LGMMLGAFVWGGLADKVGRKKCLIISLTINAAFSFVSSFVQGYGLFLFCRLISGFGIGGSLPIVF 248

  Fly   204 VVAMEMVGPDKRLYAGIFVMMFFSVGFMLTAVFA----------------YFVHDWRWLQIALTL 252
            ....|.:..:||.....::.||:.:|.:..|..|                |..|.||...:...|
 Frog   249 AYFSEFLAREKRGEHLSWLCMFWMIGAVYAAAMAWSIIPHYGWGFSMGTHYHFHSWRVFVVICVL 313

  Fly   253 PGLIFMFYYWIIPESARWLLLKGRKDCA--------IANMQKAARFNKVEISDEALSELLDEGEN 309
            |.:..:.....:|||.|:||..|:.|.|        ..||:......||    ..:|.:      
 Frog   314 PCIASIIALKFMPESPRFLLETGKHDEAWMILKNIHDTNMRAKGEPEKV----FTVSHI------ 368

  Fly   310 SEEKAKQKLEDQELDEGPP--------------PSVWD--LFCYP-NLRRKTLLIFLDWLVTSGV 357
              :..||..|..|:.....              ..:|:  |.|:. ..|:.|:.:.:.|...|..
 Frog   369 --KTPKQPDEFIEIQSSTGTWFQRWFVRIMTVIKQIWENMLHCFSGQFRKNTIFLAVVWFTMSLS 431

  Fly   358 YYGLS-W-----------------------NTSNLG----------------------------- 369
            ||||: |                       |..|..                             
 Frog   432 YYGLTVWFPDTIRYLQDEDYASKVKRFTDENVKNFNFNFTLENQIHEDGEYYNDRFYKMKLKYVT 496

  Fly   370 -----------------GNVLLNFVISGAVEIPAYI----------------------------- 388
                             |::..|..|...|.....:                             
 Frog   497 FKDSLFDECYFEDVTSTGSIFENCTIQNTVFYNTDLYQHKFIDCNFINVTFSQPKEGCHIDFEED 561

  Fly   389 --FLLLTLNRWGRRSILCGCLVMAGLSLLATVI-----IPQRMHTLIVAC----------AMLGK 436
              ||:..::..|..|:|.|.::.|   ||...|     |...|....|.|          ||:|.
 Frog   562 NDFLIYLVSFLGSLSVLPGNIISA---LLMDKIGRIRMIAGSMLISAVCCFFLFFGNSESAMIGW 623

  Fly   437 LAI-----TASYGTVYIFSAEQFPTVVRNVALGAASMVARISGMM--APFLNFLATIWKPLPLLI 494
            ..:     .|::..:.:.:.|.:||..|..|.|..:.:.:::.:.  :.|.:|:. |.|.:|:|:
 Frog   624 QCLFCGTSIAAWNALDVVTVELYPTNKRATAFGILNGLCKLAAIFGNSIFASFVG-ITKVIPILL 687

  Fly   495 CGSLTLVAGLLSLLLPET 512
            ..:..:..||:||.||||
 Frog   688 ASTALVGGGLISLRLPET 705

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Orct2NP_001262907.1 2A0119 11..520 CDD:273328 111/538 (21%)
MFS 127..503 CDD:119392 103/527 (20%)
sv2bXP_002933355.1 synapt_SV2 1..711 CDD:130366 111/538 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1933
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.940

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